GRMZM2G146514 (Zea mays)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 GRMZM2G146514 T05720_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G146514_P01 CCCH ZF 56 81
GRMZM2G146514_P01 CCCH ZF 101 126
GRMZM2G146514_P01 CCCH ZF 146 172
GRMZM2G146514_P01 CCCH ZF 307 333
GRMZM2G146514_P01 CCCH ZF 353 379
GRMZM2G146514_P02 CCCH ZF 54 79
GRMZM2G146514_P02 CCCH ZF 99 124
GRMZM2G146514_P02 CCCH ZF 144 170
GRMZM2G146514_P02 CCCH ZF 305 331
GRMZM2G146514_P02 CCCH ZF 351 377
GRMZM2G146514_P03 CCCH ZF 20 45
GRMZM2G146514_P03 CCCH ZF 65 90
GRMZM2G146514_P03 CCCH ZF 110 136
GRMZM2G146514_P03 CCCH ZF 271 297
GRMZM2G146514_P03 CCCH ZF 317 343

Links

Other CCCH ZF family RBPs
Other Zea mays RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB05G013190 Sorghum bicolor Sb05g013190 N 0.985
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.962
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.955
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.932
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.925
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.925
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.895
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.881
ppa005813m Prunus persica ppa005813m N 0.881
30128.m009030 Ricinus communis 30128.m009030 N 0.881
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.881
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.866
PK23881.1 Cannabis sativa PK23881.1 N 0.866
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.858
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.852
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.852
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.851
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.851
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.830
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.828
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.828
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.828
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.828
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.828
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.821
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.820
mgf007299m Mimulus guttatus mgf007299m N 0.815
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.812
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.806
MDP0000178517 Malus x domestica MDP0000178517 N 0.789
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.784
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.776
MDP0000577111 Malus x domestica MDP0000577111 N 0.739
MDP0000665604 Malus x domestica MDP0000665604 N 0.739
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.733
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.724
29726.m004014 Ricinus communis 29726.m004014 N 0.709