ZFN1 (Arabidopsis thaliana)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 AT3G02830-TAIR-G T01897_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G02830.1-P CCCH ZF 41 67
AT3G02830.1-P CCCH ZF 87 112
AT3G02830.1-P CCCH ZF 132 158
AT3G02830.1-P CCCH ZF 275 301
AT3G02830.1-P CCCH ZF 321 347

Links

Other CCCH ZF family RBPs
Other Arabidopsis thaliana RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 1.000
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.925
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.925
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.881
ppa005813m Prunus persica ppa005813m N 0.873
30128.m009030 Ricinus communis 30128.m009030 N 0.873
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.873
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.873
PK23881.1 Cannabis sativa PK23881.1 N 0.866
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.866
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.866
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.859
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.859
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.851
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.843
mgf007299m Mimulus guttatus mgf007299m N 0.837
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.836
SB05G013190 Sorghum bicolor Sb05g013190 N 0.836
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.836
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.828
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.828
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.828
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.821
MDP0000178517 Malus x domestica MDP0000178517 N 0.806
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.799
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.799
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.799
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.791
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.791
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.785
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.761
MDP0000577111 Malus x domestica MDP0000577111 N 0.746
MDP0000665604 Malus x domestica MDP0000665604 N 0.746
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.731
29726.m004014 Ricinus communis 29726.m004014 N 0.701