Glyma09g38650.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma09g38650.1 T05424_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma09g38650.1 CCCH ZF 39 65
Glyma09g38650.1 CCCH ZF 85 110
Glyma09g38650.1 CCCH ZF 130 156
Glyma09g38650.1 CCCH ZF 287 313
Glyma09g38650.1 CCCH ZF 333 359

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.978
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.970
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.955
ppa005813m Prunus persica ppa005813m N 0.948
30128.m009030 Ricinus communis 30128.m009030 N 0.948
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.948
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.948
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.940
PK23881.1 Cannabis sativa PK23881.1 N 0.925
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.911
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.911
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.903
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.903
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.896
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.881
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.881
SB05G013190 Sorghum bicolor Sb05g013190 N 0.881
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.881
mgf007299m Mimulus guttatus mgf007299m N 0.874
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.873
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.866
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.858
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.858
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.858
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.858
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.858
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.851
MDP0000178517 Malus x domestica MDP0000178517 N 0.851
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.844
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.843
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.806
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.791
MDP0000665604 Malus x domestica MDP0000665604 N 0.791
MDP0000577111 Malus x domestica MDP0000577111 N 0.791
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.733
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.731
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.724
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.709
29726.m004014 Ricinus communis 29726.m004014 N 0.709
ppa005056m Prunus persica ppa005056m N 0.709
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.704
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.701
MDP0000535412 Malus x domestica MDP0000535412 N 0.701
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.701
ppa005229m Prunus persica ppa005229m N 0.701