CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PK23881.1
(
Cannabis sativa
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
PK23881.1
T01774_0.6
Cannabis sativa genome (2012-Feb-20)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK23881.1
CCCH ZF
59
85
PGEQDCSYYIRTGLCRFGATCRFNHPP
PK23881.1
CCCH ZF
105
130
GQAECQYFLKTGTCKFGATCKFHHPR
PK23881.1
CCCH ZF
150
176
PNETECAYYLRTGQCKFGSTCKFHHPS
PK23881.1
CCCH ZF
310
336
PGQPECQFYMKTGDCKFGAVCKFHHPR
PK23881.1
CCCH ZF
356
382
PGEPLCIFYSRYGICKFGPSCKFDHPM
Links
Other
CCCH ZF
family RBPs
Other
Cannabis sativa
RBPs
39 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ppa005813m
Prunus persica
ppa005813m
N
0.940
30128.m009030
Ricinus communis
30128.m009030
N
0.940
cassava17662.valid.m1
Manihot esculenta
cassava17662.valid.m1
N
0.940
Glyma09g38650.1
Glycine max
Glyma09g38650.1
N
0.925
chr1.CM1413.200.nd
Lotus japonicus
chr1.CM1413.200.nd
N
0.918
Glyma10g31370.1
Glycine max
Glyma10g31370.1
N
0.910
Glyma20g36140.1
Glycine max
Glyma20g36140.1
N
0.910
cassava12889.valid.m1
Manihot esculenta
cassava12889.valid.m1
N
0.904
cassava12890.valid.m1
Manihot esculenta
cassava12890.valid.m1
N
0.904
Glyma18g47660.1
Glycine max
Glyma18g47660.1
N
0.896
LOC_Os11g28270
Oryza sativa
LOC_Os11g28270
N
0.888
LOC_Os12g21700
Oryza sativa
LOC_Os12g21700
N
0.888
Medtr7g089530
Medicago truncatula
Medtr7g089530
N
0.881
BRADI4G08050
Brachypodium distachyon
BRADI4G08050
N
0.881
mgf007299m
Mimulus guttatus
mgf007299m
N
0.874
GRMZM2G146514
Zea mays
GRMZM2G146514
N
0.866
XM_002882207.1
Arabidopsis lyrata
fgenesh2_kg.3__226__AT3G02830.1
N
0.866
ZFN1
Arabidopsis thaliana
AT3G02830-TAIR-G
N
0.866
SB05G013190
Sorghum bicolor
Sb05g013190
N
0.866
MDP0000178517
Malus x domestica
MDP0000178517
N
0.858
BRADI4G19010
Brachypodium distachyon
BRADI4G19010
N
0.858
ZFN3
Arabidopsis thaliana
AT5G16540-TAIR-G
N
0.851
BGIOSIBCE036312
Oryza indica
BGIOSIBCE036312
N
0.851
GRMZM2G100794
Zea mays
GRMZM2G100794
N
0.843
XM_002871677.1
Arabidopsis lyrata
fgenesh2_kg.6__1644__AT5G16540.1
N
0.843
Sb03g043810
Sorghum bicolor
Sb03g043810
N
0.836
GRMZM2G107491
Zea mays
GRMZM2G107491
N
0.836
GRMZM2G087032
Zea mays
GRMZM2G087032
N
0.828
LOC_Os01g68860
Oryza sativa
LOC_Os01g68860
N
0.822
BRADI2G58770
Brachypodium distachyon
BRADI2G58770
N
0.821
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.784
MDP0000577111
Malus x domestica
MDP0000577111
N
0.776
MDP0000665604
Malus x domestica
MDP0000665604
N
0.776
BGIOSIBCE004747
Oryza indica
BGIOSIBCE004747
N
0.769
gw1.151.82.1
Selaginella moellendorfii
gw1.151.82.1
N
0.741
cassava19141.valid.m1
Manihot esculenta
cassava19141.valid.m1
N
0.709
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.709
29726.m004014
Ricinus communis
29726.m004014
N
0.709
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.709