PK23881.1 (Cannabis sativa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 PK23881.1 T01774_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK23881.1 CCCH ZF 59 85
PK23881.1 CCCH ZF 105 130
PK23881.1 CCCH ZF 150 176
PK23881.1 CCCH ZF 310 336
PK23881.1 CCCH ZF 356 382

Links

Other CCCH ZF family RBPs
Other Cannabis sativa RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa005813m Prunus persica ppa005813m N 0.940
30128.m009030 Ricinus communis 30128.m009030 N 0.940
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.940
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.925
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.918
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.910
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.910
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.904
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.904
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.896
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.888
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.888
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.881
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.881
mgf007299m Mimulus guttatus mgf007299m N 0.874
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.866
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.866
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.866
SB05G013190 Sorghum bicolor Sb05g013190 N 0.866
MDP0000178517 Malus x domestica MDP0000178517 N 0.858
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.858
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.851
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.851
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.843
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.843
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.836
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.836
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.828
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.822
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.821
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.784
MDP0000577111 Malus x domestica MDP0000577111 N 0.776
MDP0000665604 Malus x domestica MDP0000665604 N 0.776
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.769
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.741
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.709
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.709
29726.m004014 Ricinus communis 29726.m004014 N 0.709
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.709