Glyma20g36140.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma20g36140.1 T05471_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma20g36140.1 CCCH ZF 38 64
Glyma20g36140.1 CCCH ZF 84 109
Glyma20g36140.1 CCCH ZF 129 155
Glyma20g36140.1 CCCH ZF 290 316
Glyma20g36140.1 CCCH ZF 336 362

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.963
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.955
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.948
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.940
30128.m009030 Ricinus communis 30128.m009030 N 0.940
ppa005813m Prunus persica ppa005813m N 0.925
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.925
PK23881.1 Cannabis sativa PK23881.1 N 0.910
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.904
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.904
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.903
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.873
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.873
mgf007299m Mimulus guttatus mgf007299m N 0.867
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.866
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.866
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.866
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.858
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.858
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.858
SB05G013190 Sorghum bicolor Sb05g013190 N 0.851
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.851
MDP0000178517 Malus x domestica MDP0000178517 N 0.828
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.828
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.828
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.828
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.828
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.821
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.821
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.815
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.784
MDP0000577111 Malus x domestica MDP0000577111 N 0.769
MDP0000665604 Malus x domestica MDP0000665604 N 0.769
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.761
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.726
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.724
29726.m004014 Ricinus communis 29726.m004014 N 0.724
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.716
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.711
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.711
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.711
ppa005056m Prunus persica ppa005056m N 0.709
29647.m002009 Ricinus communis 29647.m002009 N 0.709
mgf002685m Mimulus guttatus mgf002685m N 0.709
ppa005229m Prunus persica ppa005229m N 0.709
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.701
MDP0000535412 Malus x domestica MDP0000535412 N 0.701
MDP0000207283 Malus x domestica MDP0000207283 N 0.701
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.701