CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma20g36140.1
(
Glycine max
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Glyma20g36140.1
T05471_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma20g36140.1
CCCH ZF
38
64
PGEPDCSYYIRTGLCRFGATCRFNHPP
Glyma20g36140.1
CCCH ZF
84
109
GQPECQYYLKTGTCKFGATCKFHHPK
Glyma20g36140.1
CCCH ZF
129
155
PNEPECTYYLRTGQCKFGNTCKFHHPQ
Glyma20g36140.1
CCCH ZF
290
316
PGQPECQFYVKTGDCKFGAVCQFHHPR
Glyma20g36140.1
CCCH ZF
336
362
LGEPLCVFYSRYGICKFGPSCKFDHPM
Links
Other
CCCH ZF
family RBPs
Other
Glycine max
RBPs
49 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma10g31370.1
Glycine max
Glyma10g31370.1
N
0.963
chr1.CM1413.200.nd
Lotus japonicus
chr1.CM1413.200.nd
N
0.955
Glyma09g38650.1
Glycine max
Glyma09g38650.1
N
0.948
cassava17662.valid.m1
Manihot esculenta
cassava17662.valid.m1
N
0.940
30128.m009030
Ricinus communis
30128.m009030
N
0.940
ppa005813m
Prunus persica
ppa005813m
N
0.925
Glyma18g47660.1
Glycine max
Glyma18g47660.1
N
0.925
PK23881.1
Cannabis sativa
PK23881.1
N
0.910
cassava12890.valid.m1
Manihot esculenta
cassava12890.valid.m1
N
0.904
cassava12889.valid.m1
Manihot esculenta
cassava12889.valid.m1
N
0.904
Medtr7g089530
Medicago truncatula
Medtr7g089530
N
0.903
LOC_Os11g28270
Oryza sativa
LOC_Os11g28270
N
0.873
LOC_Os12g21700
Oryza sativa
LOC_Os12g21700
N
0.873
mgf007299m
Mimulus guttatus
mgf007299m
N
0.867
BRADI4G08050
Brachypodium distachyon
BRADI4G08050
N
0.866
XM_002882207.1
Arabidopsis lyrata
fgenesh2_kg.3__226__AT3G02830.1
N
0.866
ZFN1
Arabidopsis thaliana
AT3G02830-TAIR-G
N
0.866
BRADI4G19010
Brachypodium distachyon
BRADI4G19010
N
0.858
XM_002871677.1
Arabidopsis lyrata
fgenesh2_kg.6__1644__AT5G16540.1
N
0.858
ZFN3
Arabidopsis thaliana
AT5G16540-TAIR-G
N
0.858
SB05G013190
Sorghum bicolor
Sb05g013190
N
0.851
GRMZM2G146514
Zea mays
GRMZM2G146514
N
0.851
MDP0000178517
Malus x domestica
MDP0000178517
N
0.828
Sb03g043810
Sorghum bicolor
Sb03g043810
N
0.828
BGIOSIBCE036312
Oryza indica
BGIOSIBCE036312
N
0.828
GRMZM2G100794
Zea mays
GRMZM2G100794
N
0.828
GRMZM2G107491
Zea mays
GRMZM2G107491
N
0.828
BRADI2G58770
Brachypodium distachyon
BRADI2G58770
N
0.821
GRMZM2G087032
Zea mays
GRMZM2G087032
N
0.821
LOC_Os01g68860
Oryza sativa
LOC_Os01g68860
N
0.815
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.784
MDP0000577111
Malus x domestica
MDP0000577111
N
0.769
MDP0000665604
Malus x domestica
MDP0000665604
N
0.769
BGIOSIBCE004747
Oryza indica
BGIOSIBCE004747
N
0.761
gw1.151.82.1
Selaginella moellendorfii
gw1.151.82.1
N
0.726
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.724
29726.m004014
Ricinus communis
29726.m004014
N
0.724
cassava19141.valid.m1
Manihot esculenta
cassava19141.valid.m1
N
0.716
XM_002880280.1
Arabidopsis lyrata
scaffold_403761.1
N
0.711
AT2G47850
Arabidopsis thaliana
AT2G47850-TAIR-G
N
0.711
cassava43930.valid.m1
Manihot esculenta
cassava43930.valid.m1
N
0.711
ppa005056m
Prunus persica
ppa005056m
N
0.709
29647.m002009
Ricinus communis
29647.m002009
N
0.709
mgf002685m
Mimulus guttatus
mgf002685m
N
0.709
ppa005229m
Prunus persica
ppa005229m
N
0.709
Glyma10g02550.1
Glycine max
Glyma10g02550.1
N
0.701
MDP0000535412
Malus x domestica
MDP0000535412
N
0.701
MDP0000207283
Malus x domestica
MDP0000207283
N
0.701
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.701