Glyma10g31370.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma10g31370.1 T05430_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma10g31370.1 CCCH ZF 39 65
Glyma10g31370.1 CCCH ZF 85 110
Glyma10g31370.1 CCCH ZF 130 156
Glyma10g31370.1 CCCH ZF 282 308
Glyma10g31370.1 CCCH ZF 328 354

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.963
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.963
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.955
30128.m009030 Ricinus communis 30128.m009030 N 0.948
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.948
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.940
ppa005813m Prunus persica ppa005813m N 0.933
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.911
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.911
PK23881.1 Cannabis sativa PK23881.1 N 0.910
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.910
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.896
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.896
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.888
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.873
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.866
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.866
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.866
SB05G013190 Sorghum bicolor Sb05g013190 N 0.866
mgf007299m Mimulus guttatus mgf007299m N 0.859
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.858
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.851
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.851
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.843
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.836
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.836
MDP0000178517 Malus x domestica MDP0000178517 N 0.836
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.828
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.822
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.821
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.813
MDP0000577111 Malus x domestica MDP0000577111 N 0.784
MDP0000665604 Malus x domestica MDP0000665604 N 0.784
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.769
29726.m004014 Ricinus communis 29726.m004014 N 0.739
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.739
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.739
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.733
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.733
ppa005056m Prunus persica ppa005056m N 0.731
MDP0000535412 Malus x domestica MDP0000535412 N 0.724
ppa005229m Prunus persica ppa005229m N 0.724
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.719
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.719
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.716
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.716
29647.m002009 Ricinus communis 29647.m002009 N 0.716
mgf002685m Mimulus guttatus mgf002685m N 0.716
MDP0000319251 Malus x domestica MDP0000319251 N 0.716
MDP0000207283 Malus x domestica MDP0000207283 N 0.709
PK29685.1 Cannabis sativa PK29685.1 N 0.709
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.709