XM_002871677.1 (Arabidopsis lyrata)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh2_kg.6__1644__AT5G16540.1 T03854_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__1644__AT5G16540.1 CCCH ZF 12 37
fgenesh2_kg.6__1644__AT5G16540.1 CCCH ZF 57 82
fgenesh2_kg.6__1644__AT5G16540.1 CCCH ZF 102 128
fgenesh2_kg.6__1644__AT5G16540.1 CCCH ZF 213 239
fgenesh2_kg.6__1644__AT5G16540.1 CCCH ZF 259 285

Links

Other CCCH ZF family RBPs
Other Arabidopsis lyrata RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.970
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.925
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.925
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.858
ppa005813m Prunus persica ppa005813m N 0.858
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.858
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.851
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.851
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.851
30128.m009030 Ricinus communis 30128.m009030 N 0.851
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.843
PK23881.1 Cannabis sativa PK23881.1 N 0.843
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.842
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.837
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.837
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.835
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.827
mgf007299m Mimulus guttatus mgf007299m N 0.822
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.820
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.813
SB05G013190 Sorghum bicolor Sb05g013190 N 0.812
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.812
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.797
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.789
MDP0000178517 Malus x domestica MDP0000178517 N 0.789
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.784
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.778
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.776
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.776
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.776
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.739
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.724
MDP0000577111 Malus x domestica MDP0000577111 N 0.716
MDP0000665604 Malus x domestica MDP0000665604 N 0.716