CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ppa005813m
(
Prunus persica
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ppa005813m
T06518_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ppa005813m
CCCH ZF
51
77
TGEPDCSYYIRTGLCRFGATCRFNHPP
ppa005813m
CCCH ZF
97
122
GQPECQYYLKTGTCKFGATCKFHHPR
ppa005813m
CCCH ZF
142
168
PNEIECAYYLRTGQCKFGSTCKYHHPQ
ppa005813m
CCCH ZF
303
329
PGQPECQFYMKTGDCKFGAVCRFHHPR
ppa005813m
CCCH ZF
349
375
PGEPLCIFYSRYGICKFGPSCKFDHPM
Links
Other
CCCH ZF
family RBPs
Other
Prunus persica
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava17662.valid.m1
Manihot esculenta
cassava17662.valid.m1
N
0.970
30128.m009030
Ricinus communis
30128.m009030
N
0.970
Glyma09g38650.1
Glycine max
Glyma09g38650.1
N
0.948
cassava12890.valid.m1
Manihot esculenta
cassava12890.valid.m1
N
0.941
cassava12889.valid.m1
Manihot esculenta
cassava12889.valid.m1
N
0.941
chr1.CM1413.200.nd
Lotus japonicus
chr1.CM1413.200.nd
N
0.940
PK23881.1
Cannabis sativa
PK23881.1
N
0.940
Glyma10g31370.1
Glycine max
Glyma10g31370.1
N
0.933
Glyma20g36140.1
Glycine max
Glyma20g36140.1
N
0.925
Glyma18g47660.1
Glycine max
Glyma18g47660.1
N
0.918
LOC_Os11g28270
Oryza sativa
LOC_Os11g28270
N
0.903
LOC_Os12g21700
Oryza sativa
LOC_Os12g21700
N
0.903
Medtr7g089530
Medicago truncatula
Medtr7g089530
N
0.896
BRADI4G08050
Brachypodium distachyon
BRADI4G08050
N
0.896
mgf007299m
Mimulus guttatus
mgf007299m
N
0.881
SB05G013190
Sorghum bicolor
Sb05g013190
N
0.881
GRMZM2G146514
Zea mays
GRMZM2G146514
N
0.881
MDP0000178517
Malus x domestica
MDP0000178517
N
0.873
ZFN1
Arabidopsis thaliana
AT3G02830-TAIR-G
N
0.873
BRADI4G19010
Brachypodium distachyon
BRADI4G19010
N
0.873
XM_002882207.1
Arabidopsis lyrata
fgenesh2_kg.3__226__AT3G02830.1
N
0.873
BGIOSIBCE036312
Oryza indica
BGIOSIBCE036312
N
0.866
ZFN3
Arabidopsis thaliana
AT5G16540-TAIR-G
N
0.866
XM_002871677.1
Arabidopsis lyrata
fgenesh2_kg.6__1644__AT5G16540.1
N
0.858
GRMZM2G100794
Zea mays
GRMZM2G100794
N
0.858
Sb03g043810
Sorghum bicolor
Sb03g043810
N
0.836
GRMZM2G107491
Zea mays
GRMZM2G107491
N
0.836
LOC_Os01g68860
Oryza sativa
LOC_Os01g68860
N
0.830
GRMZM2G087032
Zea mays
GRMZM2G087032
N
0.828
BRADI2G58770
Brachypodium distachyon
BRADI2G58770
N
0.821
MDP0000665604
Malus x domestica
MDP0000665604
N
0.813
MDP0000577111
Malus x domestica
MDP0000577111
N
0.813
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.806
BGIOSIBCE004747
Oryza indica
BGIOSIBCE004747
N
0.776
gw1.151.82.1
Selaginella moellendorfii
gw1.151.82.1
N
0.733
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.731
cassava19141.valid.m1
Manihot esculenta
cassava19141.valid.m1
N
0.724
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.709
ppa005056m
Prunus persica
ppa005056m
N
0.709
mgf002685m
Mimulus guttatus
mgf002685m
N
0.709
29726.m004014
Ricinus communis
29726.m004014
N
0.709
cassava43930.valid.m1
Manihot esculenta
cassava43930.valid.m1
N
0.704
ppa005229m
Prunus persica
ppa005229m
N
0.701
MDP0000535412
Malus x domestica
MDP0000535412
N
0.701