mgf007299m (Mimulus guttatus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 mgf007299m T05620_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf007299m CCCH ZF 18 44
mgf007299m CCCH ZF 63 89
mgf007299m CCCH ZF 113 135
mgf007299m CCCH ZF 259 285
mgf007299m CCCH ZF 305 331

Links

Other CCCH ZF family RBPs
Other Mimulus guttatus RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.887
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.887
ppa005813m Prunus persica ppa005813m N 0.881
PK23881.1 Cannabis sativa PK23881.1 N 0.874
30128.m009030 Ricinus communis 30128.m009030 N 0.874
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.874
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.874
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.874
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.867
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.859
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.852
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.837
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.837
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.837
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.837
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.830
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.830
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.830
SB05G013190 Sorghum bicolor Sb05g013190 N 0.828
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.822
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.815
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.815
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.813
MDP0000178517 Malus x domestica MDP0000178517 N 0.807
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.793
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.785
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.776
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.770
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.770
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.763
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.763
MDP0000665604 Malus x domestica MDP0000665604 N 0.739
MDP0000577111 Malus x domestica MDP0000577111 N 0.739
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.719
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.711