SB05G013190 (Sorghum bicolor)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Sb05g013190 T04120_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb05g013190.1 CCCH ZF 59 84
Sb05g013190.1 CCCH ZF 104 129
Sb05g013190.1 CCCH ZF 150 175
Sb05g013190.1 CCCH ZF 311 337
Sb05g013190.1 CCCH ZF 357 383

Links

Other CCCH ZF family RBPs
Other Sorghum bicolor RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.985
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.977
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.955
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.932
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.925
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.925
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.887
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.881
ppa005813m Prunus persica ppa005813m N 0.881
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.881
30128.m009030 Ricinus communis 30128.m009030 N 0.881
PK23881.1 Cannabis sativa PK23881.1 N 0.866
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.866
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.866
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.866
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.858
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.851
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.851
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.836
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.836
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.830
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.828
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.828
mgf007299m Mimulus guttatus mgf007299m N 0.828
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.828
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.821
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.820
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.813
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.812
MDP0000178517 Malus x domestica MDP0000178517 N 0.797
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.791
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.776
MDP0000665604 Malus x domestica MDP0000665604 N 0.752
MDP0000577111 Malus x domestica MDP0000577111 N 0.752
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.733
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.724
29726.m004014 Ricinus communis 29726.m004014 N 0.709
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.709
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.709
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.701
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.701