CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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krr1
(
Xenopus tropicalis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSXETG00000013312
T19765_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000029181
KH
155
202
KRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFSGLKEVRKVV
Links
Other
KH
family RBPs
Other
Xenopus tropicalis
RBPs
110 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Q5ZKE0_CHICK
Gallus gallus
ENSGALG00000010227
N
0.922
KRR1
Meleagris gallopavo
ENSMGAG00000010844
N
0.922
KRR1
Gorilla gorilla
ENSGGOG00000013596
N
0.920
KRR1
Homo sapiens
ENSG00000111615
N
0.920
KRR1
Macaca mulatta
ENSMMUG00000009640
N
0.920
KRR1
Monodelphis domestica
ENSMODG00000020451
N
0.920
KRR1
Otolemur garnettii
ENSOGAG00000010313
N
0.920
KRR1
Oryctolagus cuniculus
ENSOCUG00000003925
N
0.920
KRR1
Felis catus
ENSFCAG00000005207
N
0.920
Krr1
Dipodomys ordii
ENSDORG00000004614
N
0.920
KRR1
Choloepus hoffmanni
ENSCHOG00000009636
N
0.920
KRR1_BOVIN
Bos taurus
ENSBTAG00000011591
N
0.920
LOC100407700
Callithrix jacchus
ENSCJAG00000001181
N
0.920
KRR1
Cavia porcellus
ENSCPOG00000014353
N
0.920
KRR1
Dasypus novemcinctus
ENSDNOG00000015614
N
0.920
KRR1
Ochotona princeps
ENSOPRG00000011858
N
0.920
KRR1
Macropus eugenii
ENSMEUG00000011365
N
0.920
KRR1
Tarsius syrichta
ENSTSYG00000009394
N
0.920
KRR1
Sorex araneus
ENSSARG00000009967
N
0.920
KRR1
Spermophilus tridecemlineatus
ENSSTOG00000003620
N
0.920
KRR1
Sus scrofa
ENSSSCG00000000520
N
0.920
KRR1
Pteropus vampyrus
ENSPVAG00000000529
N
0.920
ENSPPYG00000004785
Pongo pygmaeus
ENSPPYG00000004785
N
0.920
KRR1
Tursiops truncatus
ENSTTRG00000001661
N
0.920
XR_025480.1
Pan troglodytes
ENSPTRG00000005238
N
0.920
LOC100050169
Equus caballus
ENSECAG00000017498
N
0.900
Hrb2
Rattus norvegicus
ENSRNOG00000004035
N
0.900
KRR1
Erinaceus europaeus
ENSEEUG00000001466
N
0.900
KRR1
Takifugu rubripes
ENSTRUG00000004380
N
0.900
XM_846783.1
Canis familiaris
ENSCAFG00000005665
N
0.900
KRR1
Loxodonta africana
ENSLAFG00000015986
N
0.900
KRR1
Tupaia belangeri
ENSTBEG00000008145
N
0.900
KRR1
Danio rerio
ENSDARG00000011246
N
0.900
KRR1
Gasterosteus aculeatus
ENSGACG00000019481
N
0.900
Krr1
Mus musculus
ENSMUSG00000063334
N
0.900
Ame_R008803
Ailuropoda melanoleuca
Ame_R008803
N
0.900
KRR1
Vicugna pacos
ENSVPAG00000011750
N
0.860
KRR1
Myotis lucifugus
ENSMLUG00000002339
N
0.857
AAH72210
Xenopus laevis
AAH72210
N
0.855
AAH41273
Xenopus laevis
AAH41273
N
0.839
LELG_00899
Lodderomyces elongisporus
LELG_00899
N
0.833
CTRG_04103
Candida tropicalis
CTRG_04103
N
0.833
KRR1
Candida albicans
orf19.661
N
0.833
e_gwh1.2.1.2136.1
Pichia stipitis
e_gwh1.2.1.2136.1
N
0.833
Cd36_10710
Candida dubliniensis
Cd36_10710
N
0.833
estExt_Genewise1.C_20589
Coccomyxa C 169
estExt_Genewise1.C_20589
N
0.820
KRR1
Microcebus murinus
ENSMICG00000015127
N
0.820
KRR1
Procavia capensis
ENSPCAG00000010269
N
0.820
estExt_Genewise1Plus.C_20668
Chlorella vulgaris
estExt_Genewise1Plus.C_20668
N
0.820
DEHA0E14685g
Debaryomyces hansenii
DEHA0E14685g
N
0.800
PGUG_03304
Candida guilliermondii
PGUG_03304
N
0.800
2380_YCL059C
Saccharomyces bayanus
2380_YCL059C
N
0.800
KRR1
Saccharomyces cerevisiae
YCL059C
N
0.800
ENSETEG00000001656
Echinops telfairi
ENSETEG00000001656
N
0.800
SAKL0C00484g
Lachancea kluyveri
SAKL0C00484g
N
0.800
2245_YCL059C
Saccharomyces mikatae
2245_YCL059C
N
0.800
2217_YCL059C
Saccharomyces paradoxus
2217_YCL059C
N
0.800
Skud_Contig2065.14
Saccharomyces kudriavzevii
Skud_Contig2065.14
N
0.800
CPAG_00706
Candida parapsilosis
CPAG_00706
N
0.792
KRR1
Oryzias latipes
ENSORLG00000019616
N
0.786
CLUG_04903
Candida lusitaniae
CLUG_04903
N
0.780
PMAA_048600
Penicillium marneffei
PMAA_048600
N
0.780
Kwal_13011
Kluyveromyces waltii
Kwal_13011
N
0.780
GLRG_02756
Colletotrichum graminicola
GLRG_02756
N
0.776
XP_002158002.1
Hydra magnipapillata
XP_002158002.1
N
0.771
ATEG_01441
Aspergillus terreus
CADATEAG00000360
N
0.760
KLLA0C00506g
Kluyveromyces lactis
KLLA0C00506g
N
0.760
estExt_fgenesh1_pg.C_70293
Batrachochytrium dendrobatidis
estExt_fgenesh1_pg.C_70293
N
0.760
A7TFC5_VANPO
Vanderwaltozyma polyspora
A7TFC5_VANPO
N
0.760
KLTH0F00506g
Kluyveromyces thermotolerans
KLTH0F00506g
N
0.755
XP_002489989.1
Pichia pastoris
XP_002489989.1
N
0.750
XP_001186312.1
Strongylocentrotus purpuratus
XP_001186312.1
N
0.745
XP_786725.1
Strongylocentrotus purpuratus
XP_786725.1
N
0.745
e_gw1.35.542.1
Selaginella moellendorfii
e_gw1.35.542.1
N
0.745
BDBG_00628
Blastomyces dermatitidis
BDBG_00628
N
0.740
SPPG_02913
Spizellomyces punctatus
SPPG_02913
N
0.740
CMU_000450
Cryptosporidium muris
CMU_000450
N
0.729
PHATRDRAFT_45441
Phaeodactylum tricornutum
Phatr45441
N
0.725
estExt_fgenesh4_pg.C_90052
Volvox carteri
estExt_fgenesh4_pg.C_90052
N
0.725
ZYRO0F18458g
Zygosaccharomyces rouxii
ZYRO0F18458g
N
0.725
pasa_Sanger_mRNA6968
Chlamydomonas reinhardtii
pasa_Sanger_mRNA6968
N
0.720
estExt_Genewise1Plus.C_120457
Neurospora discreta
estExt_Genewise1Plus.C_120457
N
0.720
estExt_Genewise1.C_250056
Neurospora tetrasperma
estExt_Genewise1.C_250056
N
0.720
e_gw1.1.604.1
Mucor circinelloides
e_gw1.1.604.1
N
0.720
estExt_fgenesh1_pg.C_chr_50346
Mycosphaerella graminicola
estExt_fgenesh1_pg.C_chr_50346
N
0.720
PredSwiss_ASS2010_156.1
Pneumocystis carinii
PredSwiss_ASS2010_156.1
N
0.720
estExt_fgenesh3_pg.C_140192
Chlorella NC64A
estExt_fgenesh3_pg.C_140192
N
0.720
e_gw1.11.691.1
Mycosphaerella fijiensis
e_gw1.11.691.1
N
0.720
GSPATP00022892001
Paramecium tetraurelia
GSPATP00022892001
N
0.720
Pc15g00270
Penicillium chrysogenum
Pc15g00270
N
0.720
PTSG_07198
Salpingoeca rosetta
PTSG_07198
N
0.720
gw1.3.2120.1
Cryphonectria parasitica
gw1.3.2120.1
N
0.720
Pa_1_24010
Podospora anserina
Pa_1_24010
N
0.720
FGSG_06203
Fusarium graminearum
FGSG_06203
N
0.720
NCU07041
Neurospora crassa
NCU07041
N
0.720
fgenesh1_pm.00866_#_279
Aspergillus carbonarius
fgenesh1_pm.00866_#_279
N
0.720
3707.m00252
Tetrahymena thermophila
3707.m00252
N
0.708
Aqu1.217752
Amphimedon queenslandica
Aqu1.217752
N
0.706
RO3G_15602
Rhizopus oryzae
RO3G_15602
N
0.700
UM03241
Ustilago maydis
UM03241
N
0.700
e_gw1.10.100.1
Phycomyces blakesleeanus
e_gw1.10.100.1
N
0.700
e_gwh2.2.654.1
Phanerochaete chrysosporium
e_gwh2.2.654.1
N
0.700
estExt_fgenesh2_pg.C_210023
Monosiga brevicollis
estExt_fgenesh2_pg.C_210023
N
0.700
estExt_Genewise1Plus.C_250151
Melampsora laricis populina
estExt_Genewise1Plus.C_250151
N
0.700
fgenesh_newKGs_kg.437__12__2686076:1
Emiliania huxleyi
fgenesh_newKGs_kg.437__12__2686076:1
N
0.700
estExt_Genewise1.C_80450
Myceliophthora thermophila
estExt_Genewise1.C_80450
N
0.700
CC1G_09940
Coprinopsis cinerea
CC1G_09940
N
0.700
AGAP007912
Anopheles gambiae
AGAP007912
N
0.700
estExt_fgenesh2_pm.C_40064
Thielavia terrestris
estExt_fgenesh2_pm.C_40064
N
0.700
PK22510.1
Cannabis sativa
PK22510.1
N
0.700