CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPAG_00706
(
Candida parapsilosis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
CPAG_00706
T17589_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPAG_00706.1
KH
140
187
KRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKGLKEVRRVA
Links
Other
KH
family RBPs
Other
Candida parapsilosis
RBPs
144 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CTRG_04103
Candida tropicalis
CTRG_04103
N
0.958
KRR1
Candida albicans
orf19.661
N
0.958
e_gwh1.2.1.2136.1
Pichia stipitis
e_gwh1.2.1.2136.1
N
0.958
Cd36_10710
Candida dubliniensis
Cd36_10710
N
0.958
LELG_00899
Lodderomyces elongisporus
LELG_00899
N
0.958
CLUG_04903
Candida lusitaniae
CLUG_04903
N
0.940
Skud_Contig2065.14
Saccharomyces kudriavzevii
Skud_Contig2065.14
N
0.920
2217_YCL059C
Saccharomyces paradoxus
2217_YCL059C
N
0.920
2245_YCL059C
Saccharomyces mikatae
2245_YCL059C
N
0.920
SAKL0C00484g
Lachancea kluyveri
SAKL0C00484g
N
0.920
2380_YCL059C
Saccharomyces bayanus
2380_YCL059C
N
0.920
KLLA0C00506g
Kluyveromyces lactis
KLLA0C00506g
N
0.920
KRR1
Saccharomyces cerevisiae
YCL059C
N
0.920
DEHA0E14685g
Debaryomyces hansenii
DEHA0E14685g
N
0.920
PGUG_03304
Candida guilliermondii
PGUG_03304
N
0.920
Kwal_13011
Kluyveromyces waltii
Kwal_13011
N
0.900
ZYRO0F18458g
Zygosaccharomyces rouxii
ZYRO0F18458g
N
0.882
A7TFC5_VANPO
Vanderwaltozyma polyspora
A7TFC5_VANPO
N
0.880
KLTH0F00506g
Kluyveromyces thermotolerans
KLTH0F00506g
N
0.868
XP_002489989.1
Pichia pastoris
XP_002489989.1
N
0.846
FGSG_06203
Fusarium graminearum
FGSG_06203
N
0.820
estExt_fgenesh3_pg.C_140192
Chlorella NC64A
estExt_fgenesh3_pg.C_140192
N
0.820
estExt_Genewise1Plus.C_20668
Chlorella vulgaris
estExt_Genewise1Plus.C_20668
N
0.820
PMAA_048600
Penicillium marneffei
PMAA_048600
N
0.820
estExt_Genewise1.C_20589
Coccomyxa C 169
estExt_Genewise1.C_20589
N
0.820
AMAG_07778
Allomyces macrogynus
AMAG_07778
N
0.800
AMAG_09721
Allomyces macrogynus
AMAG_09721
N
0.800
EDP43963.1
Malassezia globosa
EDP43963.1
N
0.800
pasa_Sanger_mRNA6968
Chlamydomonas reinhardtii
pasa_Sanger_mRNA6968
N
0.800
ATEG_01441
Aspergillus terreus
CADATEAG00000360
N
0.800
GLRG_02756
Colletotrichum graminicola
GLRG_02756
N
0.796
krr1
Xenopus tropicalis
ENSXETG00000013312
N
0.792
CMU_000450
Cryptosporidium muris
CMU_000450
N
0.792
XP_002158002.1
Hydra magnipapillata
XP_002158002.1
N
0.792
YALI0F30393g
Yarrowia lipolytica
YALI0F30393g
N
0.780
estExt_fgenesh1_pg.C_chr_50346
Mycosphaerella graminicola
estExt_fgenesh1_pg.C_chr_50346
N
0.780
e_gw1.11.691.1
Mycosphaerella fijiensis
e_gw1.11.691.1
N
0.780
SPPG_02913
Spizellomyces punctatus
SPPG_02913
N
0.780
estExt_fgenesh2_pm.C_40064
Thielavia terrestris
estExt_fgenesh2_pm.C_40064
N
0.780
e_gw1.1.604.1
Mucor circinelloides
e_gw1.1.604.1
N
0.780
gw1.3.2120.1
Cryphonectria parasitica
gw1.3.2120.1
N
0.780
estExt_Genewise1.C_80450
Myceliophthora thermophila
estExt_Genewise1.C_80450
N
0.780
CNBG_5932
Cryptococcus neoformans
CNBG_5932
N
0.780
estExt_fgenesh4_pg.C_90052
Volvox carteri
estExt_fgenesh4_pg.C_90052
N
0.765
e_gw1.35.542.1
Selaginella moellendorfii
e_gw1.35.542.1
N
0.765
Krr1
Dipodomys ordii
ENSDORG00000004614
N
0.760
KRR1
Dasypus novemcinctus
ENSDNOG00000015614
N
0.760
KRR1
Cavia porcellus
ENSCPOG00000014353
N
0.760
NCU07041
Neurospora crassa
NCU07041
N
0.760
Pa_1_24010
Podospora anserina
Pa_1_24010
N
0.760
LOC100050169
Equus caballus
ENSECAG00000017498
N
0.760
LOC100407700
Callithrix jacchus
ENSCJAG00000001181
N
0.760
mis3
Schizosaccharomyces pombe
SPBC25B2.05
N
0.760
RO3G_15602
Rhizopus oryzae
RO3G_15602
N
0.760
BDBG_00628
Blastomyces dermatitidis
BDBG_00628
N
0.760
Medtr5g094630
Medicago truncatula
Medtr5g094630
N
0.760
e_gwh2.2.654.1
Phanerochaete chrysosporium
e_gwh2.2.654.1
N
0.760
fgenesh1_pm.00866_#_279
Aspergillus carbonarius
fgenesh1_pm.00866_#_279
N
0.760
KRR1_BOVIN
Bos taurus
ENSBTAG00000011591
N
0.760
KRR1
Oryctolagus cuniculus
ENSOCUG00000003925
N
0.760
KRR1
Choloepus hoffmanni
ENSCHOG00000009636
N
0.760
estExt_fgenesh2_pg.C_210023
Monosiga brevicollis
estExt_fgenesh2_pg.C_210023
N
0.760
PTSG_07198
Salpingoeca rosetta
PTSG_07198
N
0.760
Pc15g00270
Penicillium chrysogenum
Pc15g00270
N
0.760
KRR1
Monodelphis domestica
ENSMODG00000020451
N
0.760
KRR1
Sorex araneus
ENSSARG00000009967
N
0.760
KRR1
Sus scrofa
ENSSSCG00000000520
N
0.760
KRR1
Spermophilus tridecemlineatus
ENSSTOG00000003620
N
0.760
KRR1
Pteropus vampyrus
ENSPVAG00000000529
N
0.760
XR_025480.1
Pan troglodytes
ENSPTRG00000005238
N
0.760
KRR1
Otolemur garnettii
ENSOGAG00000010313
N
0.760
KRR1
Ochotona princeps
ENSOPRG00000011858
N
0.760
estExt_Genewise1Plus.C_120457
Neurospora discreta
estExt_Genewise1Plus.C_120457
N
0.760
ENSPPYG00000004785
Pongo pygmaeus
ENSPPYG00000004785
N
0.760
KRR1
Tupaia belangeri
ENSTBEG00000008145
N
0.760
KRR1
Macaca mulatta
ENSMMUG00000009640
N
0.760
KRR1
Gorilla gorilla
ENSGGOG00000013596
N
0.760
KRR1
Homo sapiens
ENSG00000111615
N
0.760
KRR1
Felis catus
ENSFCAG00000005207
N
0.760
e_gw1.7.291.1
Tremella mesenterica
e_gw1.7.291.1
N
0.760
KRR1
Macropus eugenii
ENSMEUG00000011365
N
0.760
estExt_Genewise1.C_250056
Neurospora tetrasperma
estExt_Genewise1.C_250056
N
0.760
KRR1
Tarsius syrichta
ENSTSYG00000009394
N
0.760
KRR1
Tursiops truncatus
ENSTTRG00000001661
N
0.760
PHATRDRAFT_45441
Phaeodactylum tricornutum
Phatr45441
N
0.745
estExt_fgenesh3_pm.C_180006
Postia placenta
estExt_fgenesh3_pm.C_180006
N
0.740
estExt_fgenesh2_kg.C_20554
Agaricus bisporus
estExt_fgenesh2_kg.C_20554
N
0.740
KRR1
Vicugna pacos
ENSVPAG00000011750
N
0.740
KRR1
Gasterosteus aculeatus
ENSGACG00000019481
N
0.740
KRR1
Loxodonta africana
ENSLAFG00000015986
N
0.740
KRR1
Erinaceus europaeus
ENSEEUG00000001466
N
0.740
KRR1
Danio rerio
ENSDARG00000011246
N
0.740
Ame_R008803
Ailuropoda melanoleuca
Ame_R008803
N
0.740
XM_846783.1
Canis familiaris
ENSCAFG00000005665
N
0.740
Krr1
Mus musculus
ENSMUSG00000063334
N
0.740
Hrb2
Rattus norvegicus
ENSRNOG00000004035
N
0.740
e_gw1.10.100.1
Phycomyces blakesleeanus
e_gw1.10.100.1
N
0.740
estExt_fgenesh1_pg.C_70293
Batrachochytrium dendrobatidis
estExt_fgenesh1_pg.C_70293
N
0.740
THAPSDRAFT_268598
Thalassiosira pseudonana
Thaps268598
N
0.740
PredSwiss_ASS2010_156.1
Pneumocystis carinii
PredSwiss_ASS2010_156.1
N
0.740
SJAG_00657
Schizosaccharomyces japonicus
SJAG_00657
N
0.736
cgd3_2950
Cryptosporidium parvum
cgd3_2950
N
0.735
Chro.30334
Cryptosporidium hominis
Chro.30334
N
0.735
XP_002154857.1
Hydra magnipapillata
XP_002154857.1
N
0.729
CMR456C
Cyanidioschyzon merolae
CMR456C
N
0.729
Q5ZKE0_CHICK
Gallus gallus
ENSGALG00000010227
N
0.725
KRR1
Meleagris gallopavo
ENSMGAG00000010844
N
0.725
Genemark.4150_g
Heterobasidion annosum
Genemark.4150_g
N
0.720
fgenesh2_kg.4_#_366_#_2882_1_CFPN
Serpula lacrymans
fgenesh2_kg.4_#_366_#_2882_1_CFPN
N
0.720
fgenesh1_pm.C_scaffold_4000135
Pleurotus ostreatus
fgenesh1_pm.C_scaffold_4000135
N
0.720
TGVEG_072780
Toxoplasma gondii
TGVEG_072780
N
0.720
GL18627
Drosophila persimilis
FBgn0156228
N
0.720
GJ19628
Drosophila virilis
FBgn0206770
N
0.720
GK24616
Drosophila willistoni
FBgn0226576
N
0.720
GE15854
Drosophila yakuba
FBgn0233416
N
0.720
GI18007
Drosophila mojavensis
FBgn0140747
N
0.720
GG24622
Drosophila erecta
FBgn0116754
N
0.720
KRR1
Takifugu rubripes
ENSTRUG00000004380
N
0.720
dbe
Drosophila melanogaster
FBgn0020305
N
0.720
GA18062-RA
Drosophila pseudoobscura
FBgn0078070
N
0.720
UM03241
Ustilago maydis
UM03241
N
0.720
NCLIV_025560
Neospora caninum
NCLIV_025560
N
0.720
AGAP007912
Anopheles gambiae
AGAP007912
N
0.720
e_gw1.1.3483.1
Schizophyllum commune
e_gw1.1.3483.1
N
0.720
eu2.Lbscf0025g00750
Laccaria bicolor
eu2.Lbscf0025g00750
N
0.720
estExt_Genewise1Plus.C_250151
Melampsora laricis populina
estExt_Genewise1Plus.C_250151
N
0.720
TGME49_062070
Toxoplasma gondii
TGME49_062070
N
0.720
TGGT1_008040
Toxoplasma gondii
TGGT1_008040
N
0.720
EDO06615.1
Babesia bovis
EDO06615.1
N
0.708
FVEG_06170
Fusarium verticillioides
FVEG_06170
N
0.704
PASA_GEN_0400107
Daphnia pulex
PASA_GEN_0400107
N
0.702
An02g03350
Aspergillus niger
CADANGAG00001848
N
0.702
ANIA_05875
Aspergillus nidulans
CADANIAG00007161
N
0.702
KRR1
Procavia capensis
ENSPCAG00000010269
N
0.700
KRR1
Microcebus murinus
ENSMICG00000015127
N
0.700
ENSETEG00000001656
Echinops telfairi
ENSETEG00000001656
N
0.700
CC1G_09940
Coprinopsis cinerea
CC1G_09940
N
0.700
MDP0000130613
Malus x domestica
MDP0000130613
N
0.700
eugene.0700010461
Ostreococcus lucimarinus
eugene.0700010461
N
0.700
e_gw1.07.00.268.1
Ostreococcus tauri
e_gw1.07.00.268.1
N
0.700
e_gw1.7.303.1
Ostreococcus RCC809
e_gw1.7.303.1
N
0.700
PK22510.1
Cannabis sativa
PK22510.1
N
0.700
GSPATP00022892001
Paramecium tetraurelia
GSPATP00022892001
N
0.700
MDP0000221204
Malus x domestica
MDP0000221204
N
0.700