pasa_Sanger_mRNA6968 (Chlamydomonas reinhardtii)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 pasa_Sanger_mRNA6968 T21331_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
pasa_Sanger_mRNA6968 KH 158 207

Links

Other KH family RBPs
Other Chlamydomonas reinhardtii RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.1.604.1 Mucor circinelloides e_gw1.1.604.1 N 0.920
estExt_fgenesh3_pg.C_140192 Chlorella NC64A estExt_fgenesh3_pg.C_140192 N 0.920
estExt_fgenesh4_pg.C_90052 Volvox carteri estExt_fgenesh4_pg.C_90052 N 0.902
RO3G_15602 Rhizopus oryzae RO3G_15602 N 0.900
e_gw1.10.100.1 Phycomyces blakesleeanus e_gw1.10.100.1 N 0.900
PGUG_03304 Candida guilliermondii PGUG_03304 N 0.860
2245_YCL059C Saccharomyces mikatae 2245_YCL059C N 0.840
CLUG_04903 Candida lusitaniae CLUG_04903 N 0.840
estExt_Genewise1Plus.C_20668 Chlorella vulgaris estExt_Genewise1Plus.C_20668 N 0.840
2217_YCL059C Saccharomyces paradoxus 2217_YCL059C N 0.840
Medtr5g094630 Medicago truncatula Medtr5g094630 N 0.840
KLLA0C00506g Kluyveromyces lactis KLLA0C00506g N 0.840
Skud_Contig2065.14 Saccharomyces kudriavzevii Skud_Contig2065.14 N 0.840
PTSG_07198 Salpingoeca rosetta PTSG_07198 N 0.840
estExt_Genewise1.C_20589 Coccomyxa C 169 estExt_Genewise1.C_20589 N 0.840
DEHA0E14685g Debaryomyces hansenii DEHA0E14685g N 0.840
e_gwh2.2.654.1 Phanerochaete chrysosporium e_gwh2.2.654.1 N 0.840
KRR1 Saccharomyces cerevisiae YCL059C N 0.840
EDP43963.1 Malassezia globosa EDP43963.1 N 0.840
SAKL0C00484g Lachancea kluyveri SAKL0C00484g N 0.840
2380_YCL059C Saccharomyces bayanus 2380_YCL059C N 0.840
PHATRDRAFT_45441 Phaeodactylum tricornutum Phatr45441 N 0.824
e_gw1.35.542.1 Selaginella moellendorfii e_gw1.35.542.1 N 0.824
SPPG_02913 Spizellomyces punctatus SPPG_02913 N 0.820
PK22510.1 Cannabis sativa PK22510.1 N 0.820
GL18627 Drosophila persimilis FBgn0156228 N 0.820
GK24616 Drosophila willistoni FBgn0226576 N 0.820
GE15854 Drosophila yakuba FBgn0233416 N 0.820
e_gw1.7.303.1 Ostreococcus RCC809 e_gw1.7.303.1 N 0.820
GJ19628 Drosophila virilis FBgn0206770 N 0.820
GI18007 Drosophila mojavensis FBgn0140747 N 0.820
dbe Drosophila melanogaster FBgn0020305 N 0.820
GA18062-RA Drosophila pseudoobscura FBgn0078070 N 0.820
GG24622 Drosophila erecta FBgn0116754 N 0.820
estExt_fgenesh2_pg.C_210023 Monosiga brevicollis estExt_fgenesh2_pg.C_210023 N 0.820
ATEG_01441 Aspergillus terreus CADATEAG00000360 N 0.820
MDP0000221204 Malus x domestica MDP0000221204 N 0.820
e_gw1.07.00.268.1 Ostreococcus tauri e_gw1.07.00.268.1 N 0.820
fgenesh1_pm.00866_#_279 Aspergillus carbonarius fgenesh1_pm.00866_#_279 N 0.820
MDP0000130613 Malus x domestica MDP0000130613 N 0.820
Kwal_13011 Kluyveromyces waltii Kwal_13011 N 0.820
A7TFC5_VANPO Vanderwaltozyma polyspora A7TFC5_VANPO N 0.820
estExt_fgenesh2_kg.C_20554 Agaricus bisporus estExt_fgenesh2_kg.C_20554 N 0.820
PredSwiss_ASS2010_156.1 Pneumocystis carinii PredSwiss_ASS2010_156.1 N 0.820
AMAG_07778 Allomyces macrogynus AMAG_07778 N 0.800
e_gw1.1.3483.1 Schizophyllum commune e_gw1.1.3483.1 N 0.800
estExt_Genewise1Plus.C_250151 Melampsora laricis populina estExt_Genewise1Plus.C_250151 N 0.800
e_gw1.7.291.1 Tremella mesenterica e_gw1.7.291.1 N 0.800
fgenesh1_pm.C_scaffold_4000135 Pleurotus ostreatus fgenesh1_pm.C_scaffold_4000135 N 0.800
fgenesh2_kg.4_#_366_#_2882_1_CFPN Serpula lacrymans fgenesh2_kg.4_#_366_#_2882_1_CFPN N 0.800
estExt_fgenesh3_pm.C_180006 Postia placenta estExt_fgenesh3_pm.C_180006 N 0.800
eugene.0700010461 Ostreococcus lucimarinus eugene.0700010461 N 0.800
Genemark.4150_g Heterobasidion annosum Genemark.4150_g N 0.800
PMAA_048600 Penicillium marneffei PMAA_048600 N 0.800
eu2.Lbscf0025g00750 Laccaria bicolor eu2.Lbscf0025g00750 N 0.800
UM03241 Ustilago maydis UM03241 N 0.800
AMAG_09721 Allomyces macrogynus AMAG_09721 N 0.800
CPAG_00706 Candida parapsilosis CPAG_00706 N 0.800
CNBG_5932 Cryptococcus neoformans CNBG_5932 N 0.800
e_gwh1.2.1.2136.1 Pichia stipitis e_gwh1.2.1.2136.1 N 0.800
FGSG_06203 Fusarium graminearum FGSG_06203 N 0.800
CTRG_04103 Candida tropicalis CTRG_04103 N 0.800
LELG_00899 Lodderomyces elongisporus LELG_00899 N 0.800
KRR1 Candida albicans orf19.661 N 0.800
mis3 Schizosaccharomyces pombe SPBC25B2.05 N 0.800
Cd36_10710 Candida dubliniensis Cd36_10710 N 0.800
KLTH0F00506g Kluyveromyces thermotolerans KLTH0F00506g N 0.792
XP_002489989.1 Pichia pastoris XP_002489989.1 N 0.788
ZYRO0F18458g Zygosaccharomyces rouxii ZYRO0F18458g N 0.784
XR_025480.1 Pan troglodytes ENSPTRG00000005238 N 0.780
Hrb2 Rattus norvegicus ENSRNOG00000004035 N 0.780
KRR1 Pteropus vampyrus ENSPVAG00000000529 N 0.780
KRR1 Oryctolagus cuniculus ENSOCUG00000003925 N 0.780
KRR1 Ochotona princeps ENSOPRG00000011858 N 0.780
KRR1 Otolemur garnettii ENSOGAG00000010313 N 0.780
ENSPPYG00000004785 Pongo pygmaeus ENSPPYG00000004785 N 0.780
e_gw1.11.691.1 Mycosphaerella fijiensis e_gw1.11.691.1 N 0.780
estExt_fgenesh1_pg.C_70293 Batrachochytrium dendrobatidis estExt_fgenesh1_pg.C_70293 N 0.780
Krr1 Mus musculus ENSMUSG00000063334 N 0.780
THAPSDRAFT_268598 Thalassiosira pseudonana Thaps268598 N 0.780
CMU_000450 Cryptosporidium muris CMU_000450 N 0.780
estExt_fgenesh1_pg.C_chr_50346 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_50346 N 0.780
KRR1 Tursiops truncatus ENSTTRG00000001661 N 0.780
KRR1 Sus scrofa ENSSSCG00000000520 N 0.780
KRR1 Spermophilus tridecemlineatus ENSSTOG00000003620 N 0.780
KRR1 Tupaia belangeri ENSTBEG00000008145 N 0.780
KRR1 Tarsius syrichta ENSTSYG00000009394 N 0.780
KRR1 Sorex araneus ENSSARG00000009967 N 0.780
KRR1 Macropus eugenii ENSMEUG00000011365 N 0.780
KRR1 Cavia porcellus ENSCPOG00000014353 N 0.780
KRR1 Danio rerio ENSDARG00000011246 N 0.780
YALI0F30393g Yarrowia lipolytica YALI0F30393g N 0.780
KRR1 Dasypus novemcinctus ENSDNOG00000015614 N 0.780
LOC100407700 Callithrix jacchus ENSCJAG00000001181 N 0.780
KRR1 Choloepus hoffmanni ENSCHOG00000009636 N 0.780
Pc15g00270 Penicillium chrysogenum Pc15g00270 N 0.780
KRR1 Monodelphis domestica ENSMODG00000020451 N 0.780
KRR1_BOVIN Bos taurus ENSBTAG00000011591 N 0.780
CMR456C Cyanidioschyzon merolae CMR456C N 0.780
Krr1 Dipodomys ordii ENSDORG00000004614 N 0.780
KRR1 Loxodonta africana ENSLAFG00000015986 N 0.780
BDBG_00628 Blastomyces dermatitidis BDBG_00628 N 0.780
KRR1 Macaca mulatta ENSMMUG00000009640 N 0.780
LOC100050169 Equus caballus ENSECAG00000017498 N 0.780
KRR1 Gorilla gorilla ENSGGOG00000013596 N 0.780
KRR1 Felis catus ENSFCAG00000005207 N 0.780
KRR1 Gasterosteus aculeatus ENSGACG00000019481 N 0.780
CC1G_09940 Coprinopsis cinerea CC1G_09940 N 0.780
KRR1 Homo sapiens ENSG00000111615 N 0.780
XP_786725.1 Strongylocentrotus purpuratus XP_786725.1 N 0.765
XP_001186312.1 Strongylocentrotus purpuratus XP_001186312.1 N 0.765
Ame_R008803 Ailuropoda melanoleuca Ame_R008803 N 0.760
XP_002158002.1 Hydra magnipapillata XP_002158002.1 N 0.760
estExt_Genewise1.C_80450 Myceliophthora thermophila estExt_Genewise1.C_80450 N 0.760
Chro.30334 Cryptosporidium hominis Chro.30334 N 0.760
cgd3_2950 Cryptosporidium parvum cgd3_2950 N 0.760
XM_846783.1 Canis familiaris ENSCAFG00000005665 N 0.760
KRR1 Erinaceus europaeus ENSEEUG00000001466 N 0.760
estExt_fgenesh2_pm.C_40064 Thielavia terrestris estExt_fgenesh2_pm.C_40064 N 0.760
KRR1 Takifugu rubripes ENSTRUG00000004380 N 0.760
AGAP007912 Anopheles gambiae AGAP007912 N 0.760
GLRG_02756 Colletotrichum graminicola GLRG_02756 N 0.760
fgenesh_newKGs_kg.437__12__2686076:1 Emiliania huxleyi fgenesh_newKGs_kg.437__12__2686076:1 N 0.760
gw1.3.2120.1 Cryphonectria parasitica gw1.3.2120.1 N 0.760
FVEG_06170 Fusarium verticillioides FVEG_06170 N 0.759
PASA_GEN_0400107 Daphnia pulex PASA_GEN_0400107 N 0.754
ANIA_05875 Aspergillus nidulans CADANIAG00007161 N 0.754
Aqu1.217752 Amphimedon queenslandica Aqu1.217752 N 0.745
e_gw1.7.987.1 Fragilariopsis cylindrus e_gw1.7.987.1 N 0.745
estExt_Genewise1.C_250056 Neurospora tetrasperma estExt_Genewise1.C_250056 N 0.740
estExt_Genewise1Plus.C_120457 Neurospora discreta estExt_Genewise1Plus.C_120457 N 0.740
ENSETEG00000001656 Echinops telfairi ENSETEG00000001656 N 0.740
KRR1 Vicugna pacos ENSVPAG00000011750 N 0.740
KRR1 Procavia capensis ENSPCAG00000010269 N 0.740
Pa_1_24010 Podospora anserina Pa_1_24010 N 0.740
TGVEG_072780 Toxoplasma gondii TGVEG_072780 N 0.740
NCU07041 Neurospora crassa NCU07041 N 0.740
TGME49_062070 Toxoplasma gondii TGME49_062070 N 0.740
TGGT1_008040 Toxoplasma gondii TGGT1_008040 N 0.740
NCLIV_025560 Neospora caninum NCLIV_025560 N 0.740
KRR1 Microcebus murinus ENSMICG00000015127 N 0.740
gw1.1.562.1 Micromonas pusilla gw1.1.562.1 N 0.736
Q5ZKE0_CHICK Gallus gallus ENSGALG00000010227 N 0.725
KRR1 Meleagris gallopavo ENSMGAG00000010844 N 0.725
GSPATP00022892001 Paramecium tetraurelia GSPATP00022892001 N 0.720
krr1 Xenopus tropicalis ENSXETG00000013312 N 0.720
XP_002154857.1 Hydra magnipapillata XP_002154857.1 N 0.720
3707.m00252 Tetrahymena thermophila 3707.m00252 N 0.720
AMSG_07403 Thecamonas trahens AMSG_07403 N 0.720
An02g03350 Aspergillus niger CADANGAG00001848 N 0.719
KRR1 Oryzias latipes ENSORLG00000019616 N 0.714
GSTUMT00008009001 Tuber melanosporum GSTUMT00008009001 N 0.707
EDO06615.1 Babesia bovis EDO06615.1 N 0.700