CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZYRO0F18458g
(
Zygosaccharomyces rouxii
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ZYRO0F18458g
T22102_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ZYRO0F18458g
KH
138
188
FQKRRQRLVGPNGNTLKALELLTKCYILVQGNTVAAMGNYKGLKEVRRVVE
Links
Other
KH
family RBPs
Other
Zygosaccharomyces rouxii
RBPs
139 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CLUG_04903
Candida lusitaniae
CLUG_04903
N
0.922
DEHA0E14685g
Debaryomyces hansenii
DEHA0E14685g
N
0.902
PGUG_03304
Candida guilliermondii
PGUG_03304
N
0.902
KRR1
Saccharomyces cerevisiae
YCL059C
N
0.902
2245_YCL059C
Saccharomyces mikatae
2245_YCL059C
N
0.902
2380_YCL059C
Saccharomyces bayanus
2380_YCL059C
N
0.902
2217_YCL059C
Saccharomyces paradoxus
2217_YCL059C
N
0.902
SAKL0C00484g
Lachancea kluyveri
SAKL0C00484g
N
0.902
KLLA0C00506g
Kluyveromyces lactis
KLLA0C00506g
N
0.902
Skud_Contig2065.14
Saccharomyces kudriavzevii
Skud_Contig2065.14
N
0.902
LELG_00899
Lodderomyces elongisporus
LELG_00899
N
0.882
Cd36_10710
Candida dubliniensis
Cd36_10710
N
0.882
KRR1
Candida albicans
orf19.661
N
0.882
e_gwh1.2.1.2136.1
Pichia stipitis
e_gwh1.2.1.2136.1
N
0.882
CTRG_04103
Candida tropicalis
CTRG_04103
N
0.882
CPAG_00706
Candida parapsilosis
CPAG_00706
N
0.882
Kwal_13011
Kluyveromyces waltii
Kwal_13011
N
0.882
A7TFC5_VANPO
Vanderwaltozyma polyspora
A7TFC5_VANPO
N
0.863
KLTH0F00506g
Kluyveromyces thermotolerans
KLTH0F00506g
N
0.852
XP_002489989.1
Pichia pastoris
XP_002489989.1
N
0.830
ATEG_01441
Aspergillus terreus
CADATEAG00000360
N
0.824
estExt_fgenesh4_pg.C_90052
Volvox carteri
estExt_fgenesh4_pg.C_90052
N
0.824
estExt_fgenesh3_pg.C_140192
Chlorella NC64A
estExt_fgenesh3_pg.C_140192
N
0.824
e_gw1.35.542.1
Selaginella moellendorfii
e_gw1.35.542.1
N
0.824
mis3
Schizosaccharomyces pombe
SPBC25B2.05
N
0.804
estExt_Genewise1.C_20589
Coccomyxa C 169
estExt_Genewise1.C_20589
N
0.804
AMAG_07778
Allomyces macrogynus
AMAG_07778
N
0.804
estExt_Genewise1Plus.C_20668
Chlorella vulgaris
estExt_Genewise1Plus.C_20668
N
0.804
FGSG_06203
Fusarium graminearum
FGSG_06203
N
0.804
AMAG_09721
Allomyces macrogynus
AMAG_09721
N
0.804
estExt_fgenesh1_pg.C_chr_50346
Mycosphaerella graminicola
estExt_fgenesh1_pg.C_chr_50346
N
0.784
PMAA_048600
Penicillium marneffei
PMAA_048600
N
0.784
estExt_fgenesh2_pg.C_210023
Monosiga brevicollis
estExt_fgenesh2_pg.C_210023
N
0.784
pasa_Sanger_mRNA6968
Chlamydomonas reinhardtii
pasa_Sanger_mRNA6968
N
0.784
e_gw1.11.691.1
Mycosphaerella fijiensis
e_gw1.11.691.1
N
0.784
EDP43963.1
Malassezia globosa
EDP43963.1
N
0.784
CNBG_5932
Cryptococcus neoformans
CNBG_5932
N
0.765
e_gw1.1.604.1
Mucor circinelloides
e_gw1.1.604.1
N
0.765
Medtr5g094630
Medicago truncatula
Medtr5g094630
N
0.765
Pc15g00270
Penicillium chrysogenum
Pc15g00270
N
0.765
gw1.3.2120.1
Cryphonectria parasitica
gw1.3.2120.1
N
0.765
fgenesh1_pm.00866_#_279
Aspergillus carbonarius
fgenesh1_pm.00866_#_279
N
0.765
estExt_fgenesh2_pm.C_40064
Thielavia terrestris
estExt_fgenesh2_pm.C_40064
N
0.765
SPPG_02913
Spizellomyces punctatus
SPPG_02913
N
0.765
estExt_Genewise1.C_80450
Myceliophthora thermophila
estExt_Genewise1.C_80450
N
0.765
PHATRDRAFT_45441
Phaeodactylum tricornutum
Phatr45441
N
0.750
SJAG_00657
Schizosaccharomyces japonicus
SJAG_00657
N
0.745
estExt_fgenesh1_pg.C_70293
Batrachochytrium dendrobatidis
estExt_fgenesh1_pg.C_70293
N
0.745
estExt_Genewise1Plus.C_120457
Neurospora discreta
estExt_Genewise1Plus.C_120457
N
0.745
KRR1
Tarsius syrichta
ENSTSYG00000009394
N
0.745
KRR1
Tursiops truncatus
ENSTTRG00000001661
N
0.745
estExt_Genewise1.C_250056
Neurospora tetrasperma
estExt_Genewise1.C_250056
N
0.745
KRR1
Tupaia belangeri
ENSTBEG00000008145
N
0.745
Pa_1_24010
Podospora anserina
Pa_1_24010
N
0.745
PredSwiss_ASS2010_156.1
Pneumocystis carinii
PredSwiss_ASS2010_156.1
N
0.745
NCU07041
Neurospora crassa
NCU07041
N
0.745
KRR1
Macaca mulatta
ENSMMUG00000009640
N
0.745
KRR1
Choloepus hoffmanni
ENSCHOG00000009636
N
0.745
KRR1_BOVIN
Bos taurus
ENSBTAG00000011591
N
0.745
XP_002158002.1
Hydra magnipapillata
XP_002158002.1
N
0.745
LOC100407700
Callithrix jacchus
ENSCJAG00000001181
N
0.745
KRR1
Cavia porcellus
ENSCPOG00000014353
N
0.745
Krr1
Dipodomys ordii
ENSDORG00000004614
N
0.745
KRR1
Dasypus novemcinctus
ENSDNOG00000015614
N
0.745
e_gw1.7.291.1
Tremella mesenterica
e_gw1.7.291.1
N
0.745
PK22510.1
Cannabis sativa
PK22510.1
N
0.745
YALI0F30393g
Yarrowia lipolytica
YALI0F30393g
N
0.745
BDBG_00628
Blastomyces dermatitidis
BDBG_00628
N
0.745
GLRG_02756
Colletotrichum graminicola
GLRG_02756
N
0.745
PTSG_07198
Salpingoeca rosetta
PTSG_07198
N
0.745
UM03241
Ustilago maydis
UM03241
N
0.745
RO3G_15602
Rhizopus oryzae
RO3G_15602
N
0.745
KRR1
Spermophilus tridecemlineatus
ENSSTOG00000003620
N
0.745
LOC100050169
Equus caballus
ENSECAG00000017498
N
0.745
ENSPPYG00000004785
Pongo pygmaeus
ENSPPYG00000004785
N
0.745
KRR1
Ochotona princeps
ENSOPRG00000011858
N
0.745
XR_025480.1
Pan troglodytes
ENSPTRG00000005238
N
0.745
KRR1
Pteropus vampyrus
ENSPVAG00000000529
N
0.745
KRR1
Sus scrofa
ENSSSCG00000000520
N
0.745
KRR1
Sorex araneus
ENSSARG00000009967
N
0.745
KRR1
Otolemur garnettii
ENSOGAG00000010313
N
0.745
KRR1
Oryctolagus cuniculus
ENSOCUG00000003925
N
0.745
KRR1
Gorilla gorilla
ENSGGOG00000013596
N
0.745
KRR1
Homo sapiens
ENSG00000111615
N
0.745
KRR1
Felis catus
ENSFCAG00000005207
N
0.745
KRR1
Macropus eugenii
ENSMEUG00000011365
N
0.745
e_gwh2.2.654.1
Phanerochaete chrysosporium
e_gwh2.2.654.1
N
0.745
KRR1
Monodelphis domestica
ENSMODG00000020451
N
0.745
estExt_fgenesh2_kg.C_20554
Agaricus bisporus
estExt_fgenesh2_kg.C_20554
N
0.725
Ame_R008803
Ailuropoda melanoleuca
Ame_R008803
N
0.725
KRR1
Takifugu rubripes
ENSTRUG00000004380
N
0.725
Hrb2
Rattus norvegicus
ENSRNOG00000004035
N
0.725
krr1
Xenopus tropicalis
ENSXETG00000013312
N
0.725
KRR1
Danio rerio
ENSDARG00000011246
N
0.725
XM_846783.1
Canis familiaris
ENSCAFG00000005665
N
0.725
Krr1
Mus musculus
ENSMUSG00000063334
N
0.725
KRR1
Meleagris gallopavo
ENSMGAG00000010844
N
0.725
KRR1
Gasterosteus aculeatus
ENSGACG00000019481
N
0.725
Q5ZKE0_CHICK
Gallus gallus
ENSGALG00000010227
N
0.725
KRR1
Loxodonta africana
ENSLAFG00000015986
N
0.725
THAPSDRAFT_268598
Thalassiosira pseudonana
Thaps268598
N
0.725
CMR456C
Cyanidioschyzon merolae
CMR456C
N
0.725
TGME49_062070
Toxoplasma gondii
TGME49_062070
N
0.725
TGVEG_072780
Toxoplasma gondii
TGVEG_072780
N
0.725
e_gw1.10.100.1
Phycomyces blakesleeanus
e_gw1.10.100.1
N
0.725
GSPATP00022892001
Paramecium tetraurelia
GSPATP00022892001
N
0.725
KRR1
Erinaceus europaeus
ENSEEUG00000001466
N
0.725
TGGT1_008040
Toxoplasma gondii
TGGT1_008040
N
0.725
NCLIV_025560
Neospora caninum
NCLIV_025560
N
0.725
CMU_000450
Cryptosporidium muris
CMU_000450
N
0.725
GSTUMT00008009001
Tuber melanosporum
GSTUMT00008009001
N
0.724
FVEG_06170
Fusarium verticillioides
FVEG_06170
N
0.722
PASA_GEN_0400107
Daphnia pulex
PASA_GEN_0400107
N
0.719
MDP0000130613
Malus x domestica
MDP0000130613
N
0.706
fgenesh2_kg.4_#_366_#_2882_1_CFPN
Serpula lacrymans
fgenesh2_kg.4_#_366_#_2882_1_CFPN
N
0.706
fgenesh1_pm.C_scaffold_4000135
Pleurotus ostreatus
fgenesh1_pm.C_scaffold_4000135
N
0.706
Genemark.4150_g
Heterobasidion annosum
Genemark.4150_g
N
0.706
MDP0000221204
Malus x domestica
MDP0000221204
N
0.706
GK24616
Drosophila willistoni
FBgn0226576
N
0.706
GA18062-RA
Drosophila pseudoobscura
FBgn0078070
N
0.706
GG24622
Drosophila erecta
FBgn0116754
N
0.706
GI18007
Drosophila mojavensis
FBgn0140747
N
0.706
dbe
Drosophila melanogaster
FBgn0020305
N
0.706
KRR1
Vicugna pacos
ENSVPAG00000011750
N
0.706
Bm1_51375
Brugia malayi
Bm1_51375
N
0.706
WUBG_00259
Wuchereria bancrofti
WUBG_00259
N
0.706
AGAP007912
Anopheles gambiae
AGAP007912
N
0.706
GL18627
Drosophila persimilis
FBgn0156228
N
0.706
GJ19628
Drosophila virilis
FBgn0206770
N
0.706
estExt_fgenesh3_pm.C_180006
Postia placenta
estExt_fgenesh3_pm.C_180006
N
0.706
estExt_Genewise1Plus.C_250151
Melampsora laricis populina
estExt_Genewise1Plus.C_250151
N
0.706
eu2.Lbscf0025g00750
Laccaria bicolor
eu2.Lbscf0025g00750
N
0.706
e_gw1.7.303.1
Ostreococcus RCC809
e_gw1.7.303.1
N
0.706
e_gw1.1.3483.1
Schizophyllum commune
e_gw1.1.3483.1
N
0.706
GE15854
Drosophila yakuba
FBgn0233416
N
0.706
cgd3_2950
Cryptosporidium parvum
cgd3_2950
N
0.706
Chro.30334
Cryptosporidium hominis
Chro.30334
N
0.706
e_gw1.07.00.268.1
Ostreococcus tauri
e_gw1.07.00.268.1
N
0.706
ANIA_05875
Aspergillus nidulans
CADANIAG00007161
N
0.702