PABPC4 (Otolemur garnettii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOGAG00000004067 T39825_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.839
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.746
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.746
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000003624 RRM 13 78
ENSOGAP00000003624 RRM 126 169
ENSOGAP00000003624 RRM 193 259
ENSOGAP00000003624 RRM 296 364

Links

Other RRM family RBPs
Other Otolemur garnettii RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.842
LOC100054235 Equus caballus ENSECAG00000009396 I 0.842
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.842
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.842
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.842
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.842
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.839
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.839
PABPC4 Homo sapiens ENSG00000090621 D 0.839
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.839
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.839
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.839
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.839
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.835
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.835
Gm10110 Mus musculus ENSMUSG00000062093 I 0.832
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.828
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.828
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.824
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.807
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.806
PABPC4 Gallus gallus ENSGALG00000003800 I 0.796
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.796
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.793
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.789
AAH73435 Xenopus laevis AAH73435 I 0.785
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.785
pabpc4 Danio rerio ENSDARG00000059259 I 0.781
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.778
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.774
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.774
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.771
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.753
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.749
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.749
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.749
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.749
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.749
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.746
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.746
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.746
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.746
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.746
PABPC1 Homo sapiens ENSG00000070756 D 0.746
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.746
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.746
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.746
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.746
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.746
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.746
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.743
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.742
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.738
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.731
AAH72110 Xenopus laevis AAH72110 I 0.728
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.728
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.728
AAI08463 Xenopus laevis AAI08463 I 0.728
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.728
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.728
Q6IP09 Xenopus laevis Q6IP09 I 0.728
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.724
P20965 Xenopus laevis P20965 I 0.720
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.720
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.720
AAH52100 Xenopus laevis AAH52100 I 0.720
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.720
CAA40721 Xenopus laevis CAA40721 I 0.720
pabpc1a Danio rerio ENSDARG00000017219 I 0.720
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.719
AAA60936 Xenopus laevis AAA60936 I 0.717
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.713
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.713
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.713
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.710
pabpc1b Danio rerio ENSDARG00000021140 I 0.707
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.706
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.706
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.703
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.703