PABPC4 (Procavia capensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPCAG00000003341 T40309_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.885
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.792
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.792
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.792
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.731
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000003146 RRM 13 83
ENSPCAP00000003146 RRM 101 169
ENSPCAP00000003146 RRM 193 262
ENSPCAP00000003146 RRM 322 364

Links

Other RRM family RBPs
Other Procavia capensis RBPs

108 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.892
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.892
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.892
LOC100054235 Equus caballus ENSECAG00000009396 I 0.892
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.892
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.889
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.889
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.889
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.889
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.885
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.885
PABPC4 Homo sapiens ENSG00000090621 D 0.885
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.885
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.885
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.882
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.878
Gm10110 Mus musculus ENSMUSG00000062093 I 0.871
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.871
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.871
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.849
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.846
PABPC4 Gallus gallus ENSGALG00000003800 I 0.835
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.832
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.828
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.828
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.821
AAH73435 Xenopus laevis AAH73435 I 0.821
pabpc4 Danio rerio ENSDARG00000059259 I 0.817
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.814
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.810
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.810
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.806
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.796
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.796
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.796
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.796
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.796
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.792
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.792
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.792
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.792
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.792
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.792
PABPC1 Homo sapiens ENSG00000070756 D 0.792
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.792
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.792
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.792
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.792
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.792
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.789
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.789
AAI08463 Xenopus laevis AAI08463 I 0.778
Q6IP09 Xenopus laevis Q6IP09 I 0.778
AAH72110 Xenopus laevis AAH72110 I 0.778
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.774
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.771
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.771
P20965 Xenopus laevis P20965 I 0.767
CAA40721 Xenopus laevis CAA40721 I 0.767
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.767
AAH52100 Xenopus laevis AAH52100 I 0.767
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.767
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.763
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.763
pabpc1a Danio rerio ENSDARG00000017219 I 0.763
AAA60936 Xenopus laevis AAA60936 I 0.763
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.760
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.760
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.756
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.756
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.753
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.753
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.753
pabpc1b Danio rerio ENSDARG00000021140 I 0.750
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.749
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.746
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.746
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.746
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.746
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.746
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.738
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.738
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.738
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.737
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.735
PABPC1L Gallus gallus ENSGALG00000004123 I 0.735
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.735
PABPC3 Homo sapiens ENSG00000151846 D 0.731
AAH71118 Xenopus laevis AAH71118 I 0.731
Q6GR16 Xenopus laevis Q6GR16 I 0.731
AAH80020 Xenopus laevis AAH80020 I 0.728
AAK29408 Xenopus laevis AAK29408 I 0.728
Q98SP8 Xenopus laevis Q98SP8 I 0.728
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.724
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.720
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.717
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.717
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.717
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.713
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.710
pabpc1l Danio rerio ENSDARG00000002597 I 0.710
PABPC1L Bos taurus ENSBTAG00000016849 I 0.710
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.710
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.710
LOC100070836 Equus caballus ENSECAG00000022681 I 0.703
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.703
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.703
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.703