XM_001367383.1 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000017105 T39186_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.943
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.943
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.943
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.885
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.839
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000021348 RRM 13 83
ENSMODP00000021348 RRM 101 169
ENSMODP00000021348 RRM 193 262
ENSMODP00000021348 RRM 296 364

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

157 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.943
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.943
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.943
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.943
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.943
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.943
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.943
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.943
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.943
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.943
PABPC1 Homo sapiens ENSG00000070756 D 0.943
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.943
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.943
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.943
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.943
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.943
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.943
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.939
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.936
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.925
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.921
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.921
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.914
Q6IP09 Xenopus laevis Q6IP09 I 0.903
AAH72110 Xenopus laevis AAH72110 I 0.903
AAI08463 Xenopus laevis AAI08463 I 0.903
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.900
P20965 Xenopus laevis P20965 I 0.900
AAH52100 Xenopus laevis AAH52100 I 0.900
CAA40721 Xenopus laevis CAA40721 I 0.900
AAA60936 Xenopus laevis AAA60936 I 0.896
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.896
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.896
pabpc1a Danio rerio ENSDARG00000017219 I 0.896
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.896
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.896
PABPC3 Homo sapiens ENSG00000151846 D 0.885
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.885
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.885
pabpc1b Danio rerio ENSDARG00000021140 I 0.882
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.882
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.878
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.878
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.875
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.871
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.867
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.864
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.863
AAH73435 Xenopus laevis AAH73435 I 0.860
PABPC4 Gallus gallus ENSGALG00000003800 I 0.860
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.857
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.857
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.854
pabpc4 Danio rerio ENSDARG00000059259 I 0.849
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.846
LOC100054235 Equus caballus ENSECAG00000009396 I 0.842
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.842
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.842
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.842
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.842
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.842
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.842
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.842
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.839
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.839
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.839
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.839
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.839
Gm10110 Mus musculus ENSMUSG00000062093 I 0.839
PABPC4 Homo sapiens ENSG00000090621 D 0.839
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.839
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.839
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.839
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.839
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.835
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.835
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.835
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.835
PABPC1L Gallus gallus ENSGALG00000004123 I 0.835
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.832
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.832
Q98SP8 Xenopus laevis Q98SP8 I 0.828
AAH80020 Xenopus laevis AAH80020 I 0.828
AAK29408 Xenopus laevis AAK29408 I 0.828
LOC100056021 Equus caballus ENSECAG00000020699 I 0.828
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.824
AAH71118 Xenopus laevis AAH71118 I 0.824
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.824
Q6GR16 Xenopus laevis Q6GR16 I 0.824
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.821
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.817
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.810
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.810
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.806
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.803
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.803
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.799
pabpc1l Danio rerio ENSDARG00000002597 I 0.799
PABPC1L Bos taurus ENSBTAG00000016849 I 0.796
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.792
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.789
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.789
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.789
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.785
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.781
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.781
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.781
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.781
PABPC1L Homo sapiens ENSG00000101104 I 0.778
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.778
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.778
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.778
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.778
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.778
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.777
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.774
LOC100070836 Equus caballus ENSECAG00000022681 I 0.774
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.771
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.771
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.767
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.767
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.763
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.760
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.756
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.753
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.749
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.746
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.746
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.746
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.742
ISCW014211 Ixodes scapularis ISCW014211 I 0.739
PHUM617090 Pediculus humanus PHUM617090 I 0.739
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.738
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.735
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.735
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.728
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.724
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.724
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.724
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.724
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.724
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.724
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.721
AGAP011092 Anopheles gambiae AGAP011092 I 0.721
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.721
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.717
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.717
AAEL010318 Aedes aegypti AAEL010318 I 0.717
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.717
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.717
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.714
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.710
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.708
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.704
185682 Helobdella robusta 185682 I 0.703
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.701
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.701