PABPC4 (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000010416 T41630_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.846
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.749
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.749
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.749
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000009349 RRM 13 83
ENSSTOP00000009349 RRM 101 135
ENSSTOP00000009349 RRM 193 262
ENSSTOP00000009349 RRM 296 364

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

86 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.853
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.853
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.853
LOC100054235 Equus caballus ENSECAG00000009396 I 0.853
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.849
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.849
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.846
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.846
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.846
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.846
PABPC4 Homo sapiens ENSG00000090621 D 0.846
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.846
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.842
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.842
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.842
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.839
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.835
Gm10110 Mus musculus ENSMUSG00000062093 I 0.832
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.828
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.810
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.806
PABPC4 Gallus gallus ENSGALG00000003800 I 0.803
PABPC4 Tarsius syrichta ENSTSYG00000006532 I 0.802
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.800
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.796
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.796
AAH73435 Xenopus laevis AAH73435 I 0.789
pabpc4 Danio rerio ENSDARG00000059259 I 0.785
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.781
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.781
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.778
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.778
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.774
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.753
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.753
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.753
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.753
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.753
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.753
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.749
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.749
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.749
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.749
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.749
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.749
PABPC1 Homo sapiens ENSG00000070756 D 0.749
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.749
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.749
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.749
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.749
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.749
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.746
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.746
Q6IP09 Xenopus laevis Q6IP09 I 0.738
AAH72110 Xenopus laevis AAH72110 I 0.738
AAI08463 Xenopus laevis AAI08463 I 0.738
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.738
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.735
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.728
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.724
P20965 Xenopus laevis P20965 I 0.724
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.724
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.724
CAA40721 Xenopus laevis CAA40721 I 0.724
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.724
AAH52100 Xenopus laevis AAH52100 I 0.724
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.724
pabpc1a Danio rerio ENSDARG00000017219 I 0.720
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.720
AAA60936 Xenopus laevis AAA60936 I 0.720
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.720
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.720
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.717
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.713
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.713
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.710
pabpc1b Danio rerio ENSDARG00000021140 I 0.707
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.706
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.703
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.703
PABPC1L Gallus gallus ENSGALG00000004123 I 0.703
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.703
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.703
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.703
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.703
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.703