CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPC4
(
Spermophilus tridecemlineatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSTOG00000010416
T41630_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.846
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.749
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.749
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.749
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000009349
RRM
13
83
LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIR
ENSSTOP00000009349
RRM
101
135
VFIKNLDKSIDNKALYDTFSAFGNILSCKXXXXXX
ENSSTOP00000009349
RRM
193
262
VYIKNFGEEIDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF
ENSSTOP00000009349
RRM
296
364
LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY
Links
Other
RRM
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
86 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PABPC4
Loxodonta africana
ENSLAFG00000000151
I
0.853
ENSMICG00000000431
Microcebus murinus
ENSMICG00000000431
I
0.853
PABPC4
Canis familiaris
ENSCAFG00000003081
I
0.853
LOC100054235
Equus caballus
ENSECAG00000009396
I
0.853
PABPC4
Macaca mulatta
ENSMMUG00000007497
I
0.849
PABPC4
Sus scrofa
ENSSSCG00000003660
I
0.849
PABPC4
Gorilla gorilla
ENSGGOG00000004002
I
0.846
ENSPPYG00000001506
Pongo pygmaeus
ENSPPYG00000001506
I
0.846
PABPC4
Pan troglodytes
ENSPTRG00000000573
I
0.846
A4IFC3_BOVIN
Bos taurus
ENSBTAG00000017125
I
0.846
PABPC4
Homo sapiens
ENSG00000090621
D
0.846
PABPC4
Oryctolagus cuniculus
ENSOCUG00000000562
I
0.846
A6MKJ4_CALJA
Callithrix jacchus
ENSCJAG00000002512
I
0.842
PABPC4
Ochotona princeps
ENSOPRG00000011984
I
0.842
PABPC4
Cavia porcellus
ENSCPOG00000009552
I
0.842
PABPC4
Erinaceus europaeus
ENSEEUG00000002962
I
0.839
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.835
Gm10110
Mus musculus
ENSMUSG00000062093
I
0.832
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.828
D3ZEY8_RAT
Rattus norvegicus
ENSRNOG00000028592
I
0.810
ENSMICG00000016633
Microcebus murinus
ENSMICG00000016633
I
0.806
PABPC4
Gallus gallus
ENSGALG00000003800
I
0.803
PABPC4
Tarsius syrichta
ENSTSYG00000006532
I
0.802
XM_001365232.1
Monodelphis domestica
ENSMODG00000017657
I
0.800
PABPC4
Taeniopygia guttata
ENSTGUG00000001266
I
0.796
ENSOANG00000010001
Ornithorhynchus anatinus
ENSOANG00000010001
I
0.796
AAH73435
Xenopus laevis
AAH73435
I
0.789
pabpc4
Danio rerio
ENSDARG00000059259
I
0.785
Ame_R019277
Ailuropoda melanoleuca
Ame_R019277
I
0.781
Q8QGJ7_FUGRU
Takifugu rubripes
ENSTRUG00000005907
I
0.781
PABPC4
Oryzias latipes
ENSORLG00000017479
I
0.778
PABPC4
Gasterosteus aculeatus
ENSGACG00000007179
I
0.778
PABPC4
Tetraodon nigroviridis
ENSTNIG00000016902
I
0.774
PABPC1
Taeniopygia guttata
ENSTGUG00000012067
I
0.753
Pabpc1
Rattus norvegicus
ENSRNOG00000008639
I
0.753
ENSACAG00000016470
Anolis carolinensis
ENSACAG00000016470
I
0.753
ENSOANG00000007307
Ornithorhynchus anatinus
ENSOANG00000007307
I
0.753
Pabpc1
Mus musculus
ENSMUSG00000022283
I
0.753
XR_030308.1
Monodelphis domestica
ENSMODG00000006222
I
0.753
ENSOPRG00000009667
Ochotona princeps
ENSOPRG00000009667
I
0.749
ENSOCUG00000023935
Oryctolagus cuniculus
ENSOCUG00000023935
I
0.749
ENSOCUG00000004354
Oryctolagus cuniculus
ENSOCUG00000004354
I
0.749
ENSPPYG00000018790
Pongo pygmaeus
ENSPPYG00000018790
I
0.749
ENSLAFG00000013994
Loxodonta africana
ENSLAFG00000013994
I
0.749
PABPC1
Macaca mulatta
ENSMMUG00000017786
I
0.749
PABPC1
Homo sapiens
ENSG00000070756
D
0.749
ENSCAFG00000000567
Canis familiaris
ENSCAFG00000000567
I
0.749
ENSSSCG00000006063
Sus scrofa
ENSSSCG00000006063
I
0.749
ENSTTRG00000004689
Tursiops truncatus
ENSTTRG00000004689
I
0.749
LOC100413032
Callithrix jacchus
ENSCJAG00000015833
I
0.749
ENSPVAG00000016640
Pteropus vampyrus
ENSPVAG00000016640
I
0.749
PABPC4
Procavia capensis
ENSPCAG00000003341
I
0.746
XR_023909.1
Pan troglodytes
ENSPTRG00000020475
I
0.746
Q6IP09
Xenopus laevis
Q6IP09
I
0.738
AAH72110
Xenopus laevis
AAH72110
I
0.738
AAI08463
Xenopus laevis
AAI08463
I
0.738
ENSACAG00000002544
Anolis carolinensis
ENSACAG00000002544
I
0.738
pabpc1
Xenopus tropicalis
ENSXETG00000006635
I
0.735
ENSTSYG00000004229
Tarsius syrichta
ENSTSYG00000004229
I
0.728
ENSORLG00000003008
Oryzias latipes
ENSORLG00000003008
I
0.724
P20965
Xenopus laevis
P20965
I
0.724
LOC100411130
Callithrix jacchus
ENSCJAG00000018953
I
0.724
PABPC3
Oryzias latipes
ENSORLG00000002691
I
0.724
CAA40721
Xenopus laevis
CAA40721
I
0.724
XM_001367383.1
Monodelphis domestica
ENSMODG00000017105
I
0.724
AAH52100
Xenopus laevis
AAH52100
I
0.724
PABPC3
Takifugu rubripes
ENSTRUG00000011577
I
0.724
pabpc1a
Danio rerio
ENSDARG00000017219
I
0.720
pabpc4
Xenopus tropicalis
ENSXETG00000010946
I
0.720
AAA60936
Xenopus laevis
AAA60936
I
0.720
Ame_R001741
Ailuropoda melanoleuca
Ame_R001741
I
0.720
ENSPPYG00000005219
Pongo pygmaeus
ENSPPYG00000005219
I
0.720
PABPC3
Gasterosteus aculeatus
ENSGACG00000003572
I
0.717
ENSTNIG00000009153
Tetraodon nigroviridis
ENSTNIG00000009153
I
0.713
ENSTRUG00000003767
Takifugu rubripes
ENSTRUG00000003767
I
0.713
PABPC3
Macaca mulatta
ENSMMUG00000020835
I
0.710
pabpc1b
Danio rerio
ENSDARG00000021140
I
0.707
Pabpc2
Mus musculus
ENSMUSG00000051732
I
0.706
Pabpc2
Rattus norvegicus
ENSRNOG00000014527
I
0.703
Pabpc3
Rattus norvegicus
ENSRNOG00000017367
I
0.703
PABPC1L
Gallus gallus
ENSGALG00000004123
I
0.703
PABPC1L
Anolis carolinensis
ENSACAG00000011841
I
0.703
PABPC1L
Meleagris gallopavo
ENSMGAG00000003674
I
0.703
Pabpc6
Mus musculus
ENSMUSG00000046173
I
0.703
PABPC4
Otolemur garnettii
ENSOGAG00000004067
I
0.703
Q2VIP2_PANTR
Pan troglodytes
ENSPTRG00000022593
I
0.703