Pabpc3 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000017367 T41116_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.932
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.932
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.932
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.885
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.824
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000023319 RRM 13 83
ENSRNOP00000023319 RRM 101 169
ENSRNOP00000023319 RRM 193 262
ENSRNOP00000023319 RRM 306 374

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

143 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.982
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.932
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.932
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.932
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.932
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.932
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.932
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.932
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.932
PABPC1 Homo sapiens ENSG00000070756 D 0.932
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.932
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.932
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.932
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.928
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.928
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.928
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.928
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.928
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.928
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.921
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.910
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.910
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.903
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.900
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.896
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.896
Q6IP09 Xenopus laevis Q6IP09 I 0.889
AAH72110 Xenopus laevis AAH72110 I 0.889
AAI08463 Xenopus laevis AAI08463 I 0.889
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.885
PABPC3 Homo sapiens ENSG00000151846 D 0.885
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.885
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.885
pabpc1a Danio rerio ENSDARG00000017219 I 0.885
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.885
P20965 Xenopus laevis P20965 I 0.882
CAA40721 Xenopus laevis CAA40721 I 0.882
AAH52100 Xenopus laevis AAH52100 I 0.882
AAA60936 Xenopus laevis AAA60936 I 0.878
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.875
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.875
pabpc1b Danio rerio ENSDARG00000021140 I 0.871
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.871
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.871
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.871
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.860
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.860
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.853
AAH73435 Xenopus laevis AAH73435 I 0.849
PABPC4 Gallus gallus ENSGALG00000003800 I 0.842
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.839
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.832
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.832
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.832
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.832
LOC100054235 Equus caballus ENSECAG00000009396 I 0.828
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.828
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.828
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.828
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.828
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.828
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.828
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.828
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.828
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.824
PABPC4 Homo sapiens ENSG00000090621 D 0.824
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.824
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.824
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.824
Gm10110 Mus musculus ENSMUSG00000062093 I 0.821
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.821
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.821
PABPC1L Gallus gallus ENSGALG00000004123 I 0.821
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.817
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.817
pabpc4 Danio rerio ENSDARG00000059259 I 0.817
LOC100056021 Equus caballus ENSECAG00000020699 I 0.817
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.810
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.810
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.810
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.806
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.806
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.806
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.806
AAH71118 Xenopus laevis AAH71118 I 0.799
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.799
AAH80020 Xenopus laevis AAH80020 I 0.799
AAK29408 Xenopus laevis AAK29408 I 0.799
Q6GR16 Xenopus laevis Q6GR16 I 0.799
Q98SP8 Xenopus laevis Q98SP8 I 0.799
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.796
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.792
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.789
pabpc1l Danio rerio ENSDARG00000002597 I 0.785
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.785
PABPC1L Bos taurus ENSBTAG00000016849 I 0.781
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.781
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.778
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.778
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.778
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.775
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.774
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.774
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.771
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.767
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.767
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.767
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.767
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.763
LOC100070836 Equus caballus ENSECAG00000022681 I 0.763
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.763
PABPC1L Homo sapiens ENSG00000101104 I 0.763
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.763
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.763
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.760
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.760
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.760
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.760
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.760
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.756
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.753
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.749
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.738
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.735
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.731
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.731
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.728
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.728
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.724
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.721
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.717
ISCW014211 Ixodes scapularis ISCW014211 I 0.708
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.707
AGAP011092 Anopheles gambiae AGAP011092 I 0.707
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.707
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.707
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.706
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.703
PHUM617090 Pediculus humanus PHUM617090 I 0.703
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.703
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.703
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.703
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.703