PABPC3 (Macaca mulatta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMMUG00000020835 T38982_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.946
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.946
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.946
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.946
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.832
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000027420 RRM 13 83
ENSMMUP00000027420 RRM 101 169
ENSMMUP00000027420 RRM 193 262
ENSMMUP00000027420 RRM 296 364

Links

Other RRM family RBPs
Other Macaca mulatta RBPs

155 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.968
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.957
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.946
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.946
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.946
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.946
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.946
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.946
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.946
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.946
PABPC1 Homo sapiens ENSG00000070756 D 0.946
PABPC3 Homo sapiens ENSG00000151846 D 0.946
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.946
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.946
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.946
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.943
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.943
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.943
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.943
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.943
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.943
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.936
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.925
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.925
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.914
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.914
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.903
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.900
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.900
pabpc1a Danio rerio ENSDARG00000017219 I 0.900
AAH72110 Xenopus laevis AAH72110 I 0.896
AAI08463 Xenopus laevis AAI08463 I 0.896
Q6IP09 Xenopus laevis Q6IP09 I 0.896
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.896
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.896
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.892
AAH52100 Xenopus laevis AAH52100 I 0.892
CAA40721 Xenopus laevis CAA40721 I 0.892
P20965 Xenopus laevis P20965 I 0.892
AAA60936 Xenopus laevis AAA60936 I 0.889
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.885
pabpc1b Danio rerio ENSDARG00000021140 I 0.882
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.882
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.878
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.878
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.878
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.867
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.867
AAH73435 Xenopus laevis AAH73435 I 0.853
PABPC4 Gallus gallus ENSGALG00000003800 I 0.846
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.842
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.842
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.839
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.839
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.836
LOC100054235 Equus caballus ENSECAG00000009396 I 0.835
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.835
LOC100056021 Equus caballus ENSECAG00000020699 I 0.835
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.835
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.835
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.835
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.835
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.835
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.835
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.832
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.832
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.832
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.832
PABPC4 Homo sapiens ENSG00000090621 D 0.832
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.832
pabpc4 Danio rerio ENSDARG00000059259 I 0.832
Gm10110 Mus musculus ENSMUSG00000062093 I 0.828
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.828
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.824
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.824
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.824
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.821
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.821
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.821
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.821
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.821
PABPC1L Gallus gallus ENSGALG00000004123 I 0.817
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.814
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.814
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.810
AAK29408 Xenopus laevis AAK29408 I 0.810
Q98SP8 Xenopus laevis Q98SP8 I 0.810
AAH80020 Xenopus laevis AAH80020 I 0.810
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.799
AAH71118 Xenopus laevis AAH71118 I 0.799
Q6GR16 Xenopus laevis Q6GR16 I 0.799
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.799
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.796
pabpc1l Danio rerio ENSDARG00000002597 I 0.792
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.792
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.789
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.782
PABPC1L Bos taurus ENSBTAG00000016849 I 0.781
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.778
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.778
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.774
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.774
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.771
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.771
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.771
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.770
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.767
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.767
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.767
PABPC1L Homo sapiens ENSG00000101104 I 0.763
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.763
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.763
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.763
LOC100070836 Equus caballus ENSECAG00000022681 I 0.760
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.760
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.760
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.753
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.753
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.753
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.753
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.753
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.749
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.749
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.746
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.739
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.739
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.735
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.731
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.731
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.728
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.728
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.728
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.728
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.728
PHUM617090 Pediculus humanus PHUM617090 I 0.721
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.721
AGAP011092 Anopheles gambiae AGAP011092 I 0.721
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.721
ISCW014211 Ixodes scapularis ISCW014211 I 0.718
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.717
AAEL010318 Aedes aegypti AAEL010318 I 0.717
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.717
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.714
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.713
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.710
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.710
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.710
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.710
185682 Helobdella robusta 185682 I 0.707
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.707
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.707
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.706
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.704
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.703
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.703