RBM28 (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSLAFG00000010717 T081710_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
RBM28
M14627_2.00		 Loxodonta africana NGWGUAGW JPLE
Sasse et al.(2025)
RM_Lox.afr_ENSLAFG00000010717 		0.008

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM28
M00630_2.00 		Homo sapiens GUGGGUCUCGK HTR-SELEX
Jolma et al.(2020)
0.928
RBM28
M00629_2.00 		Homo sapiens KRGGYYGWGCGGUGG HTR-SELEX
Jolma et al.(2020)
0.928
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
0.928
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.008
(86.64%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000008971 RRM 3 82
ENSLAFP00000008971 RRM 111 193
ENSLAFP00000008971 RRM 329 418
ENSLAFP00000008971 RRM 481 572

RNA contacting residues

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Aan_R015248 Calypte anna Aan_R015248 I 0.000
Aan_R015520 Calypte anna Aan_R015520 I 0.000
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.000
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.000
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.000
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.000
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.000
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.000
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.000
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.000
NONO Anolis carolinensis ENSACAG00000015026 I 0.000
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.000
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.000
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.000
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.000
NONO Bos taurus ENSBTAG00000012152 I 0.000
SFPQ Bos taurus ENSBTAG00000016328 I 0.000
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.000
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.000
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.000
ENSCAFG00000013766 Canis familiaris ENSCAFG00000013766 I 0.000
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.000
ENSCAFG00000030809 Canis familiaris ENSCAFG00000030809 I 0.000
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.000
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.000
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.000
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.000
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.000
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.000
ENSCPOG00000026604 Cavia porcellus ENSCPOG00000026604 I 0.000
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.000
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.000
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.000
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.000
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.000
NONO Equus caballus ENSECAG00000008502 I 0.000
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.000
SFPQ Echinops telfairi ENSETEG00000001095 I 0.000
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.000
NONO Felis catus ENSFCAG00000014807 I 0.000
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.000
SFPQ Homo sapiens ENSG00000116560 D 0.000
NONO Homo sapiens ENSG00000147140 D 0.000
SFPQ Gallus gallus ENSGALG00000002514 I 0.000
NONO Gallus gallus ENSGALG00000005507 I 0.000
NONO Gorilla gorilla ENSGGOG00000006194 I 0.000
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.000
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.000
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.000
NONO Loxodonta africana ENSLAFG00000013422 I 0.000
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.000
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.000
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.000
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.000
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.000
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.000
NONO Microcebus murinus ENSMICG00000000232 I 0.000
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.000
NONO Myotis lucifugus ENSMLUG00000002489 I 0.000
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.000
NONO Macaca mulatta ENSMMUG00000020481 I 0.000
NONO Monodelphis domestica ENSMODG00000004445 I 0.000
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.000
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.000
Sfpq Mus musculus ENSMUSG00000028820 I 0.000
Nono Mus musculus ENSMUSG00000031311 I 0.000
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.000
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.000
ENSOARG00000016966 Ovis aries ENSOARG00000016966 I 0.000
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.000
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.000
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.000
NONO Otolemur garnettii ENSOGAG00000004834 I 0.000
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.000
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.000
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.000
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.000
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.000
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.000
NONO Procavia capensis ENSPCAG00000002541 I 0.000
SFPQ Procavia capensis ENSPCAG00000006164 I 0.000
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.000
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.000
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.000
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.000
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.000
NONO Pan troglodytes ENSPTRG00000022010 I 0.000
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.000
Nono Rattus norvegicus ENSRNOG00000003689 I 0.000
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.000
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.000
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.000
NONO Sus scrofa ENSSSCG00000023245 I 0.000
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.000
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.000
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.000
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.000
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.000
NONO Tursiops truncatus ENSTTRG00000009605 I 0.000
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.000
NONO Vicugna pacos ENSVPAG00000002272 I 0.000
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.000
Gfo_R003471 Geospiza fortis Gfo_R003471 I 0.000
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.000
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.000
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.000
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.000
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.000
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.000
Tal_R004102 Tyto alba Tal_R004102 I 0.000
Tal_R009770 Tyto alba Tal_R009770 I 0.000
nono Xenopus tropicalis XB-GENE-1002494 I 0.000
nono.L Xenopus laevis XB-GENE-1002501 I 0.000
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.000
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.000