ENSP00000349748-D1 (Bos grunniens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSP00000349748-D1 T118836_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSP00000349748-D1
M04257_2.00		 Bos grunniens NGURGKKU JPLE
Sasse et al.(2025)
RM_Bos.gru_ENSP00000349748-D1 		0.008

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
1.000
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
1.000
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
1.000
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
1.000
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.730
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.008
(88.41%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000349748-D1 RRM 19 96
ENSP00000349748-D1 RRM 93 161

RNA contacting residues

Links

Other RRM family RBPs
Other Bos grunniens RBPs

186 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SFPQ Homo sapiens ENSG00000116560 D 1.000
NONO Homo sapiens ENSG00000147140 D 0.730
NONO Pan troglodytes ENSPTRG00000022010 I 0.730
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.884
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.730
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.966
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.952
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.730
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 1.000
NONO Sus scrofa ENSSSCG00000023245 I 0.730
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.980
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.723
NONO Sorex araneus ENSSARG00000007959 I 0.723
Sfpq Rattus norvegicus ENSRNOG00000058461 I 1.000
Nono Rattus norvegicus ENSRNOG00000003689 I 0.730
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.730
NONO Tursiops truncatus ENSTTRG00000009605 I 0.730
SFPQ Pan troglodytes ENSPTRG00000000518 I 1.000
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.980
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.736
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.730
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 1.000
SFPQ Procavia capensis ENSPCAG00000006164 I 1.000
NONO Procavia capensis ENSPCAG00000002541 I 0.730
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.730
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 1.000
SFPQ Ochotona princeps ENSOPRG00000013696 I 1.000
SFPQ Otolemur garnettii ENSOGAG00000027710 I 1.000
NONO Otolemur garnettii ENSOGAG00000004834 I 0.730
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.730
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 1.000
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.730
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.891
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.776
nono.L Xenopus laevis XB-GENE-1002501 I 0.728
nono Xenopus tropicalis XB-GENE-1002494 I 0.723
Tal_R009770 Tyto alba Tal_R009770 I 0.966
Tal_R004102 Tyto alba Tal_R004102 I 0.730
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.980
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.730
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.730
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.993
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.730
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.966
Gfo_R003471 Geospiza fortis Gfo_R003471 I 0.000
ENSOARG00000016966 Ovis aries ENSOARG00000016966 I 0.723
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.730
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.966
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.736
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.966
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.730
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.973
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.736
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.966
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.730
Aan_R015520 Calypte anna Aan_R015520 I 0.966
Aan_R015248 Calypte anna Aan_R015248 I 0.716
SFPQ Vicugna pacos ENSVPAG00000006960 I 1.000
NONO Vicugna pacos ENSVPAG00000002272 I 0.730
SFPQ Tursiops truncatus ENSTTRG00000013930 I 1.000
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 1.000
SFPQ Echinops telfairi ENSETEG00000001095 I 1.000
NONO Equus caballus ENSECAG00000008502 I 0.730
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 1.000
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.973
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 1.000
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.730
nono Danio rerio ENSDARG00000020482 I 0.714
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 1.000
ENSCPOG00000026604 Cavia porcellus ENSCPOG00000026604 I 0.000
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.723
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 1.000
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.730
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.730
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.703
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.730
ENSCAFG00000030809 Canis familiaris ENSCAFG00000030809 I 0.000
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.952
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.730
ENSCAFG00000013766 Canis familiaris ENSCAFG00000013766 I 0.000
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 1.000
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.730
SFPQ Bos taurus ENSBTAG00000016328 I 1.000
NONO Bos taurus ENSBTAG00000012152 I 0.730
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.966
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.730
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.830
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.730
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 1.000
NONO Anolis carolinensis ENSACAG00000015026 I 0.716
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.980
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.959
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 1.000
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.730
Nono Mus musculus ENSMUSG00000031311 I 0.730
Sfpq Mus musculus ENSMUSG00000028820 I 1.000
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.730
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.980
NONO Monodelphis domestica ENSMODG00000004445 I 0.723
NONO Macaca mulatta ENSMMUG00000020481 I 0.730
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.986
NONO Myotis lucifugus ENSMLUG00000002489 I 0.730
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 1.000
NONO Microcebus murinus ENSMICG00000000232 I 0.730
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.730
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 1.000
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.723
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.735
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.871
SFPQ Loxodonta africana ENSLAFG00000015951 I 1.000
NONO Loxodonta africana ENSLAFG00000013422 I 0.730
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.879
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.735
SFPQ Gorilla gorilla ENSGGOG00000026354 I 1.000
NONO Gorilla gorilla ENSGGOG00000006194 I 0.730
NONO Gallus gallus ENSGALG00000005507 I 0.730
SFPQ Gallus gallus ENSGALG00000002514 I 0.952
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 1.000
NONO Felis catus ENSFCAG00000014807 I 0.730