PSPC1 (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSLAFG00000010968 T081712_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
PSPC1
M14629_2.00		 Loxodonta africana NGURGKKU JPLE
Sasse et al.(2025)
RM_Lox.afr_ENSLAFG00000010968 		0.059

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.748
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.748
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.748
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.748
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.059
(89.32%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000009174 RRM 78 155
ENSLAFP00000009174 RRM 152 217
ENSLAFP00000023426 RRM 78 155
ENSLAFP00000023426 RRM 152 217

RNA contacting residues

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

129 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.748
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.000
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.755
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.000
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.000
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.762
NONO Anolis carolinensis ENSACAG00000015026 I 0.000
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.738
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.000
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.762
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.741
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.000
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.748
NONO Bos taurus ENSBTAG00000012152 I 0.000
SFPQ Bos taurus ENSBTAG00000016328 I 0.748
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.000
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.762
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.748
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.000
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.000
Aan_R015520 Calypte anna Aan_R015520 I 0.762
Aan_R015248 Calypte anna Aan_R015248 I 0.000
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.000
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.748
ENSCAFG00000013766 Canis familiaris ENSCAFG00000013766 I 0.000
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.000
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.747
ENSCAFG00000030809 Canis familiaris ENSCAFG00000030809 I 0.000
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.000
ENSCPOG00000026604 Cavia porcellus ENSCPOG00000026604 I 0.000
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.000
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.748
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.748
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.000
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.748
nono Danio rerio ENSDARG00000020482 I 0.743
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.000
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.748
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.741
SFPQ Echinops telfairi ENSETEG00000001095 I 0.748
NONO Equus caballus ENSECAG00000008502 I 0.000
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.748
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.000
NONO Felis catus ENSFCAG00000014807 I 0.000
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.748
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.000
NONO Gallus gallus ENSGALG00000005507 I 0.000
SFPQ Gallus gallus ENSGALG00000002514 I 0.772
Gfo_R003471 Geospiza fortis Gfo_R003471 I 0.000
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.762
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.748
NONO Gorilla gorilla ENSGGOG00000006194 I 0.000
NONO Homo sapiens ENSG00000147140 D 0.000
SFPQ Homo sapiens ENSG00000116560 D 0.748
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.748
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.000
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.000
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.711
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.741
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.726
NONO Loxodonta africana ENSLAFG00000013422 I 0.000
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.748
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.000
NONO Macaca mulatta ENSMMUG00000020481 I 0.000
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.000
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.755
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.000
NONO Microcebus murinus ENSMICG00000000232 I 0.000
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.748
NONO Monodelphis domestica ENSMODG00000004445 I 0.000
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.755
Sfpq Mus musculus ENSMUSG00000028820 I 0.748
Nono Mus musculus ENSMUSG00000031311 I 0.000
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.000
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.755
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.755
NONO Myotis lucifugus ENSMLUG00000002489 I 0.000
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.748
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.000
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.748
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.000
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.000
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.748
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.748
NONO Otolemur garnettii ENSOGAG00000004834 I 0.000
ENSOARG00000016966 Ovis aries ENSOARG00000016966 I 0.000
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.748
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.748
NONO Pan troglodytes ENSPTRG00000022010 I 0.000
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.748
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.000
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.000
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.741
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.748
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.000
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.748
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.000
SFPQ Procavia capensis ENSPCAG00000006164 I 0.748
NONO Procavia capensis ENSPCAG00000002541 I 0.000
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.000
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.748
Nono Rattus norvegicus ENSRNOG00000003689 I 0.000
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.000
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.755
NONO Sorex araneus ENSSARG00000007959 I 0.000
NONO Sus scrofa ENSSSCG00000023245 I 0.000
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.762
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.000
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.776
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.728
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.748
NONO Tursiops truncatus ENSTTRG00000009605 I 0.000
Tal_R004102 Tyto alba Tal_R004102 I 0.000
Tal_R009770 Tyto alba Tal_R009770 I 0.762
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.748
NONO Vicugna pacos ENSVPAG00000002272 I 0.000
nono.L Xenopus laevis XB-GENE-1002501 I 0.000
nono Xenopus tropicalis XB-GENE-1002494 I 0.000
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.878
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.755