ATRBP47A (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT1G49600-TAIR-G T32658_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.715
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AT1G49600.1-P RRM 121 190
AT1G49600.1-P RRM 215 286
AT1G49600.1-P RRM 329 393

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29801.m003218 Ricinus communis 29801.m003218 I 0.758
30170.m014217 Ricinus communis 30170.m014217 I 0.734
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.705
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.831
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.768
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.739
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.763
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.744
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.745
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.734
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.715
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.729
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.995
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.845
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.778
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.739
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.783
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.725
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.734
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.710
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.700
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.720
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.792
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.715
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.715
MDP0000136330 Malus x domestica MDP0000136330 I 0.754
MDP0000142206 Malus x domestica MDP0000142206 N 0.700
MDP0000176892 Malus x domestica MDP0000176892 N 0.712
MDP0000200455 Malus x domestica MDP0000200455 I 0.754
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.734
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.744
mgf000380m Mimulus guttatus mgf000380m I 0.744
mgf011075m Mimulus guttatus mgf011075m I 0.705
PK00840.1 Cannabis sativa PK00840.1 I 0.712
PK15272.1 Cannabis sativa PK15272.1 I 0.787
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.715
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.812
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.783
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.729
ppa005661m Prunus persica ppa005661m I 0.797
ppa005903m Prunus persica ppa005903m I 0.749
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.710