THOC4 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000011595 T42101_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000014545 RRM 86 155

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

109 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL005114 Aedes aegypti AAEL005114 N 0.829
AAEL015263 Aedes aegypti AAEL015263 N 0.829
AAH74336 Xenopus laevis AAH74336 N 0.943
AAH92013 Xenopus laevis AAH92013 N 0.957
AGAP006733 Anopheles gambiae AGAP006733 N 0.843
amel4_ncbi_hmm10980 Apis mellifera amel4_ncbi_hmm10980 N 0.871
Ame_R000656 Ailuropoda melanoleuca Ame_R000656 N 0.957
Aqu1.225634 Amphimedon queenslandica Aqu1.225634 N 0.786
BGIBMGA005323 Bombyx mori BGIBMGA005323 N 0.857
CPIJ007834 Culex quinquefasciatus CPIJ007834 N 0.829
CpipJ_CPIJ007834 Culex pipiens CpipJ_CPIJ007834 N 0.829
DGIL_AUG5s14095g4t3 Acyrtosiphon pisum DGIL_AUG5s14095g4t3 N 0.714
THOC4 Anolis carolinensis ENSACAG00000010526 N 0.957
THOC4_BOVIN Bos taurus ENSBTAG00000008498 N 0.957
THOC4 Canis familiaris ENSCAFG00000005877 N 0.957
ENSCING00000013568 Ciona intestinalis ENSCING00000013568 N 0.771
ENSCJAG00000021543 Callithrix jacchus ENSCJAG00000021543 N 0.886
THOC4 Cavia porcellus ENSCPOG00000013710 N 0.957
Q8MY63_CIOSA Ciona savignyi ENSCSAVG00000003324 N 0.757
tho4 Danio rerio ENSDARG00000077732 N 0.957
LOC100055097 Equus caballus ENSECAG00000018754 N 0.957
THOC4 Erinaceus europaeus ENSEEUG00000010164 N 0.886
THOC4 Echinops telfairi ENSETEG00000016596 N 0.957
THOC4 Homo sapiens ENSG00000183684 N 0.957
THOC4 Gasterosteus aculeatus ENSGACG00000013328 N 0.943
ENSGACG00000018178 Gasterosteus aculeatus ENSGACG00000018178 N 0.829
THOC4 Gallus gallus ENSGALG00000007237 N 0.957
THOC4 Gorilla gorilla ENSGGOG00000013935 N 0.957
THOC4 Loxodonta africana ENSLAFG00000003083 N 0.957
THOC4 Macropus eugenii ENSMEUG00000002210 N 0.729
ENSMGAG00000005389 Meleagris gallopavo ENSMGAG00000005389 N 0.957
THOC4 Microcebus murinus ENSMICG00000017403 N 0.957
ENSMLUG00000001217 Myotis lucifugus ENSMLUG00000001217 N 0.786
ENSMLUG00000001244 Myotis lucifugus ENSMLUG00000001244 N 0.786
ENSMLUG00000002626 Myotis lucifugus ENSMLUG00000002626 N 0.800
ENSMLUG00000002669 Myotis lucifugus ENSMLUG00000002669 N 0.786
ENSMLUG00000004521 Myotis lucifugus ENSMLUG00000004521 N 0.786
ENSMLUG00000004992 Myotis lucifugus ENSMLUG00000004992 N 0.786
ENSMLUG00000006641 Myotis lucifugus ENSMLUG00000006641 N 0.771
ENSMLUG00000007513 Myotis lucifugus ENSMLUG00000007513 N 0.814
ENSMLUG00000007617 Myotis lucifugus ENSMLUG00000007617 N 0.786
ENSMLUG00000007634 Myotis lucifugus ENSMLUG00000007634 N 0.786
ENSMLUG00000008410 Myotis lucifugus ENSMLUG00000008410 N 0.729
ENSMLUG00000008923 Myotis lucifugus ENSMLUG00000008923 N 0.786
ENSMLUG00000009247 Myotis lucifugus ENSMLUG00000009247 N 0.771
ENSMLUG00000009447 Myotis lucifugus ENSMLUG00000009447 N 0.757
ENSMLUG00000009449 Myotis lucifugus ENSMLUG00000009449 N 0.743
ENSMLUG00000009555 Myotis lucifugus ENSMLUG00000009555 N 0.886
ENSMLUG00000009822 Myotis lucifugus ENSMLUG00000009822 N 0.786
ENSMLUG00000010127 Myotis lucifugus ENSMLUG00000010127 N 0.800
ENSMLUG00000010456 Myotis lucifugus ENSMLUG00000010456 N 0.771
ENSMLUG00000010927 Myotis lucifugus ENSMLUG00000010927 N 0.757
ENSMLUG00000011212 Myotis lucifugus ENSMLUG00000011212 N 0.786
ENSMLUG00000011599 Myotis lucifugus ENSMLUG00000011599 N 0.786
ENSMLUG00000013041 Myotis lucifugus ENSMLUG00000013041 N 0.786
ENSMLUG00000013085 Myotis lucifugus ENSMLUG00000013085 N 0.786
ENSMLUG00000014480 Myotis lucifugus ENSMLUG00000014480 N 0.771
ENSMLUG00000015043 Myotis lucifugus ENSMLUG00000015043 N 0.800
ENSMLUG00000015142 Myotis lucifugus ENSMLUG00000015142 N 0.757
ENSMLUG00000016194 Myotis lucifugus ENSMLUG00000016194 N 0.800
THOC4 Macaca mulatta ENSMMUG00000012884 N 0.957
THOC4 Monodelphis domestica ENSMODG00000003030 N 0.957
Thoc4 Mus musculus ENSMUSG00000025134 N 0.957
Refbp2 Mus musculus ENSMUSG00000060244 N 0.929
Gm5698 Mus musculus ENSMUSG00000086151 N 0.814
Gm5699 Mus musculus ENSMUSG00000087346 N 0.829
THOC4 Otolemur garnettii ENSOGAG00000012409 N 0.957
THOC4 Ochotona princeps ENSOPRG00000005551 N 0.729
ENSORLG00000001620 Oryzias latipes ENSORLG00000001620 N 0.743
THOC4 Oryzias latipes ENSORLG00000012331 N 0.957
ENSPPYG00000008749 Pongo pygmaeus ENSPPYG00000008749 N 0.957
THOC4 Pan troglodytes ENSPTRG00000009774 N 0.957
THOC4 Pteropus vampyrus ENSPVAG00000017866 N 0.957
Thoc4 Rattus norvegicus ENSRNOG00000036687 N 0.957
ENSTBEG00000005834 Tupaia belangeri ENSTBEG00000005834 N 0.957
THOC4 Taeniopygia guttata ENSTGUG00000003513 N 0.743
ENSTNIG00000014136 Tetraodon nigroviridis ENSTNIG00000014136 N 0.743
ENSTRUG00000003051 Takifugu rubripes ENSTRUG00000003051 N 0.814
THOC4 Takifugu rubripes ENSTRUG00000008828 N 0.900
THOC4 Tursiops truncatus ENSTTRG00000012275 N 0.957
thoc4 Xenopus tropicalis ENSXETG00000005391 N 0.957
estExt_fgenesh1_pg.C_6740009 Capitella teleta estExt_fgenesh1_pg.C_6740009 N 0.714
estExt_Genewise1.C_7200001 Capitella teleta estExt_Genewise1.C_7200001 N 0.800
e_gw.394.68.1 Branchiostoma floridae e_gw.394.68.1 N 0.871
e_gw.5.817.1 Branchiostoma floridae e_gw.5.817.1 N 0.871
Aly Drosophila melanogaster FBgn0010774 N 0.786
aly Drosophila yakuba FBgn0068000 N 0.786
GA10707-RA Drosophila pseudoobscura FBgn0070763 N 0.814
GF17326 Drosophila ananassae FBgn0094344 N 0.786
GG10124 Drosophila erecta FBgn0102435 N 0.786
GH18594 Drosophila grimshawi FBgn0126061 N 0.786
GI23076 Drosophila mojavensis FBgn0145803 N 0.786
GL12678 Drosophila persimilis FBgn0150284 N 0.814
GM10513 Drosophila sechellia FBgn0165460 N 0.786
GD19510 Drosophila simulans FBgn0191006 N 0.786
GJ22697 Drosophila virilis FBgn0209801 N 0.786
GK12741 Drosophila willistoni FBgn0214750 N 0.786
fgeneshTA2_pg.C_scaffold_2000899 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000899 N 0.700
gw1.3495.5.1 Capitella teleta gw1.3495.5.1 N 0.700
ISCW001860 Ixodes scapularis ISCW001860 N 0.871
nasonia_NCBI_hmm488134 Nasonia vitripennis nasonia_NCBI_hmm488134 N 0.786
PASA_GEN_1400063 Daphnia pulex PASA_GEN_1400063 N 0.843
PHUM023420 Pediculus humanus PHUM023420 N 0.814
Q58EA2 Xenopus laevis Q58EA2 N 0.957
Q6GLW1 Xenopus laevis Q6GLW1 N 0.943
Smp_108820 Schistosoma mansoni Smp_108820 N 0.829
XP_001185635.1 Strongylocentrotus purpuratus XP_001185635.1 N 0.843
XP_002155396.1 Hydra magnipapillata XP_002155396.1 N 0.700
XP_782040.2 Strongylocentrotus purpuratus XP_782040.2 N 0.843