XM_002872481.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.6__3042__AT4G10610.1 T44569_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__3042__AT4G10610.1 RRM 152 219
fgenesh2_kg.6__3042__AT4G10610.1 RRM 249 317

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29485.m000140 Ricinus communis 29485.m000140 N 0.847
29650.m000268 Ricinus communis 29650.m000268 N 0.745
30068.m002593 Ricinus communis 30068.m002593 N 0.891
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.759
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.876
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.752
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.752
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.803
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.978
CID13 Arabidopsis thaliana AT5G24440-TAIR-G N 0.701
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.730
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.701
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.861
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.737
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.745
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.730
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.854
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.759
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.847
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.847
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.847
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.847
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.847
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.847
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.847
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.891
cassava45236.m1 Manihot esculenta cassava45236.m1 N 0.737
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.723
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.832
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.861
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.861
XM_002874153.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001957 N 0.701
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.876
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.759
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.803
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.839
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.839
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.839
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.839
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.752
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.745
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.701
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.715
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.869
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.708
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.723
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.861
GRMZM2G349794 Zea mays GRMZM2G349794 N 0.774
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.752
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.876
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.869
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.825
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.825
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.752
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.730
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.715
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.861
MDP0000223003 Malus x domestica MDP0000223003 N 0.701
MDP0000233630 Malus x domestica MDP0000233630 N 0.847
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.839
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.818
mgf005336m Mimulus guttatus mgf005336m N 0.723
mgf012896m Mimulus guttatus mgf012896m N 0.854
mgf013366m Mimulus guttatus mgf013366m N 0.839
mgf014445m Mimulus guttatus mgf014445m N 0.723
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.730
PK04894.1 Cannabis sativa PK04894.1 N 0.854
PK12463.1 Cannabis sativa PK12463.1 N 0.905
PK28889.1 Cannabis sativa PK28889.1 N 0.737
B9GIT2_POPTR Populus trichocarpa POPTR_0001s45290 N 0.766
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.715
B9IDI5_POPTR Populus trichocarpa POPTR_0015s00770 N 0.715
ppa006808m Prunus persica ppa006808m N 0.847
ppa009298m Prunus persica ppa009298m N 0.759
SB03G002180 Sorghum bicolor Sb03g002180 N 0.715
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.730
SB07G001560 Sorghum bicolor Sb07g001560 N 0.861
SB10G021290 Sorghum bicolor Sb10g021290 N 0.737