LOC_Os11g41820 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os11g41820 T45158_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os11g41820.1 RRM 240 265
LOC_Os11g41820.1 RRM 271 315
LOC_Os11g41820.1 RRM 360 430
LOC_Os11g41820.1 RRM 505 558
LOC_Os11g41820.2 RRM 240 265
LOC_Os11g41820.2 RRM 271 315
LOC_Os11g41820.2 RRM 360 430

Links

Other RRM family RBPs
Other Oryza sativa RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29646.m001075 Ricinus communis 29646.m001075 N 0.915
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.776
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.895
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.877
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.867
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.863
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.979
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.880
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.796
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.796
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.786
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.786
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.786
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.786
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.786
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.755
chr3.CM0129.190.nd Lotus japonicus chr3.CM0129.190.nd N 0.859
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.795
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.700
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.709
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.709
e_gwW.23.55.1 Chlamydomonas reinhardtii e_gwW.23.55.1 N 0.706
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.780
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.772
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.755
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.757
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.930
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.965
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.944
GSVIVG00007437001 Vitis vinifera GSVIVG00007437001 N 0.824
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.804
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.707
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.873
MDP0000194332 Malus x domestica MDP0000194332 N 0.790
MDP0000306572 Malus x domestica MDP0000306572 N 0.795
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.888
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.771
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.771
mgf002992m Mimulus guttatus mgf002992m N 0.901
mgf004253m Mimulus guttatus mgf004253m N 0.789
mgf007385m Mimulus guttatus mgf007385m N 0.789
mgf010551m Mimulus guttatus mgf010551m N 0.766
PK22404.1 Cannabis sativa PK22404.1 N 0.908
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.796
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.786
Sb05g025260 Sorghum bicolor Sb05g025260 N 0.944
SB05G026740 Sorghum bicolor Sb05g026740 N 0.854
SB05G026783 Sorghum bicolor Sb05g026783 N 0.713
SB05G026786 Sorghum bicolor Sb05g026786 N 0.923