fgenesh1_pg.C_scaffold_1000747 (Cryphonectria parasitica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pg.C_scaffold_1000747 T56554_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_1000747 RRM 56 126

Links

Other RRM family RBPs
Other Cryphonectria parasitica RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
2118330B Xenopus laevis 2118330B N 0.000
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.000
AAH72902 Xenopus laevis AAH72902 N 0.000
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.732
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.732
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.000
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.704
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.915
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.887
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.000
Bm1_02935 Brugia malayi Bm1_02935 N 0.000
CAA59259 Xenopus laevis CAA59259 N 0.000
ACLA_080400 Aspergillus clavatus CADACLAG00007885 N 0.831
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.887
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.915
An12g03930 Aspergillus niger CADANGAG00009835 N 0.901
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.915
CAOG_06930 Capsaspora owczarzaki CAOG_06930 N 0.000
CHGG_03355 Chaetomium globosum CHGG_03355 N 0.847
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.887
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.887
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.775
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.000
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.887
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.775
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.000
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.000
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.000
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.000
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.000
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.000
NCBP2 Equus caballus ENSECAG00000016153 N 0.000
NCBP2 Homo sapiens ENSG00000114503 N 0.000
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.000
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.000
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.000
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.000
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.000
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.000
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.000
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.000
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.000
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.000
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.000
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.000
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.000
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.000
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.000
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.000
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.000
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.000
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.000
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.000
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.000
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.000
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.000
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.000
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.000
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.000
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.000
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.000
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.704
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.000
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.944
estExt_fgenesh1_pm.C_20437 Schizophyllum commune estExt_fgenesh1_pm.C_20437 N 0.727
estExt_fgenesh2_kg.C_120041 Serpula lacrymans estExt_fgenesh2_kg.C_120041 N 0.000
estExt_fgenesh2_kg.C_20664 Agaricus bisporus estExt_fgenesh2_kg.C_20664 N 0.000
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.887
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.930
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.944
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.915
estExt_Genewise1_worm.C_60324 Laccaria bicolor estExt_Genewise1_worm.C_60324 N 0.000
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.958
e_gw1.121.83.1 Postia placenta e_gw1.121.83.1 N 0.727
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.944
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.803
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.915
e_gw1.40.70.1 Melampsora laricis populina e_gw1.40.70.1 N 0.761
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.704
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.901
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.817
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.958
FOXG_09405 Fusarium oxysporum FOXG_09405 N 0.847
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.944
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.775
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.930
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.859
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.718
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.718
gw1.1.1171.1 Sporobolomyces roseus gw1.1.1171.1 N 0.789
gw1.1.2136.1 Pleurotus ostreatus gw1.1.2136.1 N 0.000
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.803
gwh2.1.1054.1 Phanerochaete chrysosporium gwh2.1.1054.1 N 0.740
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.887
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.732
LOAG_03270 Loa loa LOAG_03270 N 0.704
MCYG_04468 Microsporum canis MCYG_04468 N 0.887
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.915
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.887
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.732
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.732
P52299 Xenopus laevis P52299 N 0.000
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.887
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.958
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.915
PGTG_01720 Puccinia graminis PGTG_01720 N 0.761
PHUM535920 Pediculus humanus PHUM535920 N 0.746
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.901
PredSwiss_ASS2010_2397.2 Pneumocystis carinii PredSwiss_ASS2010_2397.2 N 0.747
PredSwiss_CON682.3 Pneumocystis carinii PredSwiss_CON682.3 N 0.747
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.887
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.803
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.887
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.789
cbc2 Schizosaccharomyces pombe SPBC13A2.01c N 0.803
SPOG_01217 Schizosaccharomyces cryophilus SPOG_01217 N 0.775
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.831
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.915
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.887
TERG_03424 Trichophyton rubrum TERG_03424 N 0.887
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.873
VDAG_05874 Verticillium dahliae VDAG_05874 N 0.930
VDBG_06810 Verticillium albo atrum VDBG_06810 N 0.930
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.704
XP_001187788.1 Strongylocentrotus purpuratus XP_001187788.1 N 0.000
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.000