BRADI2G52180 (Brachypodium distachyon)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 BRADI2G52180 T18158_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G52180.1 KH 149 198

Links

Other KH family RBPs
Other Brachypodium distachyon RBPs

167 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Medtr5g095530 Medicago truncatula Medtr5g095530 N 0.760
fgenesh3_pm.54__15 Postia placenta fgenesh3_pm.54__15 N 0.740
fgenesh2_pm.scaffold_78000001 Branchiostoma floridae fgenesh2_pm.scaffold_78000001 N 0.740
fgenesh2_pg.scaffold_196000015 Branchiostoma floridae fgenesh2_pg.scaffold_196000015 N 0.740
fgenesh1_pm.C_scaffold_5000030 Phytophthora ramorum fgenesh1_pm.C_scaffold_5000030 N 0.760
fgenesh1_pg.scaffold_18000119 Nematostella vectensis fgenesh1_pg.scaffold_18000119 N 0.740
fgenesh1_kg.C_scaffold_5000048 Selaginella moellendorfii fgenesh1_kg.C_scaffold_5000048 N 0.840
estExt_Genewise1Plus.C_600117 Volvox carteri estExt_Genewise1Plus.C_600117 N 0.780
estExt_Genewise1Plus.C_10658 Mucor circinelloides estExt_Genewise1Plus.C_10658 N 0.700
Glyma08g44800.1 Glycine max Glyma08g44800.1 N 0.880
Glyma18g08080.1 Glycine max Glyma18g08080.1 N 0.880
Medtr3g080390 Medicago truncatula Medtr3g080390 N 0.860
GRMZM2G139198 Zea mays GRMZM2G139198 N 1.000
GRMZM2G085005 Zea mays GRMZM2G085005 N 1.000
s_468317 Phytophthora sojae s_468317 N 0.760
mgf019585m Mimulus guttatus mgf019585m N 0.880
mgf006621m Mimulus guttatus mgf006621m N 0.940
GP3.070330 Batrachochytrium dendrobatidis GP3.070330 N 0.700
Glyma18g08100.1 Glycine max Glyma18g08100.1 N 0.880
estExt_genewise1_human.C_chr_1.20929 Pichia stipitis estExt_genewise1_human.C_chr_1.20929 N 0.700
estExt_Genewise1.C_5820041 Capitella teleta estExt_Genewise1.C_5820041 N 0.720
estExt_fgenesh1_pg.C_110137 Monosiga brevicollis estExt_fgenesh1_pg.C_110137 N 0.700
Cucsa.201760 Cucumis sativus Cucsa.201760 N 0.880
Cucsa.041830 Cucumis sativus Cucsa.041830 N 0.880
Chlre2_kg.scaffold_20000177 Chlamydomonas reinhardtii Chlre2_kg.scaffold_20000177 N 0.780
cassava7030.valid.m1 Manihot esculenta cassava7030.valid.m1 N 0.880
cassava30594.valid.m1 Manihot esculenta cassava30594.valid.m1 N 0.900
28525.m000262 Ricinus communis 28525.m000262 N 0.920
27316 Aureococcus anophagefferens 27316 N 0.700
TGVEG_087040 Toxoplasma gondii TGVEG_087040 N 0.700
e_gw1.13.100.1 Volvox carteri e_gw1.13.100.1 N 0.700
e_gw1.2.2126.1 Schizophyllum commune e_gw1.2.2126.1 N 0.740
estExt_fgenesh1_kg.C_140013 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_140013 N 0.720
e_gww2.1.865.1 Phanerochaete chrysosporium e_gww2.1.865.1 N 0.740
e_gwh1.2.512.1 Laccaria bicolor e_gwh1.2.512.1 N 0.740
e_gwEuk.7.409.1 Ostreococcus lucimarinus e_gwEuk.7.409.1 N 0.740
e_gw1.8.261.1 Sporobolomyces roseus e_gw1.8.261.1 N 0.700
e_gw1.7.528.1 Ostreococcus RCC809 e_gw1.7.528.1 N 0.740
e_gw1.4.614.1 Micromonas pusilla e_gw1.4.614.1 N 0.740
e_gw1.226.39.1 Physcomitrella patens e_gw1.226.39.1 N 0.880
TGME49_020490 Toxoplasma gondii TGME49_020490 N 0.700
Scas_Contig632.19 Saccharomyces castellii Scas_Contig632.19 N 0.720
Q8AVH4 Xenopus laevis Q8AVH4 N 0.720
ppa009897m Prunus persica ppa009897m N 0.920
PDK_20s1554761g001 Phoenix dactylifera PDK_20s1554761g001 N 0.940
PDK_20s1552091g001 Phoenix dactylifera PDK_20s1552091g001 N 0.920
MDP0000754021 Malus x domestica MDP0000754021 N 0.920
MDP0000265633 Malus x domestica MDP0000265633 N 0.920
MDP0000136407 Malus x domestica MDP0000136407 N 0.920
MDP0000120063 Malus x domestica MDP0000120063 N 0.920
LjSGA_017760.2 Lotus japonicus LjSGA_017760.2 N 0.860
ppa011086m Prunus persica ppa011086m N 0.920
SAKL0G03740g Lachancea kluyveri SAKL0G03740g N 0.700
AAQ24169 Xenopus laevis AAQ24169 N 0.720
AAH42279 Xenopus laevis AAH42279 N 0.720
ZYRO0D11440g Zygosaccharomyces rouxii ZYRO0D11440g N 0.700
XP_798188.2 Strongylocentrotus purpuratus XP_798188.2 N 0.760
XP_791733.2 Strongylocentrotus purpuratus XP_791733.2 N 0.760
XP_002162789.1 Hydra magnipapillata XP_002162789.1 N 0.740
XP_001202160.1 Strongylocentrotus purpuratus XP_001202160.1 N 0.760
XP_001202155.1 Strongylocentrotus purpuratus XP_001202155.1 N 0.760
Kwal_18864 Kluyveromyces waltii Kwal_18864 N 0.720
KLTH0G02574g Kluyveromyces thermotolerans KLTH0G02574g N 0.720
KLLA0C06446g Kluyveromyces lactis KLLA0C06446g N 0.720
CAGL0K09460g Candida glabrata CAGL0K09460g N 0.700
Ame_R013855 Ailuropoda melanoleuca Ame_R013855 N 0.740
A7THL8_VANPO Vanderwaltozyma polyspora A7THL8_VANPO N 0.700
3712.m00082 Tetrahymena thermophila 3712.m00082 N 0.700
23888_YOR145C Saccharomyces bayanus 23888_YOR145C N 0.700
20872_YOR145C Saccharomyces paradoxus 20872_YOR145C N 0.720
20359_YOR145C Saccharomyces mikatae 20359_YOR145C N 0.706
0700010277 Ostreococcus tauri 0700010277 N 0.760
Cd36_35296 Candida dubliniensis Cd36_35296 N 0.700
EDO07242.1 Babesia bovis EDO07242.1 N 0.700
gw1.1.2472.1 Pleurotus ostreatus gw1.1.2472.1 N 0.720
GSPATP00021981001 Paramecium tetraurelia GSPATP00021981001 N 0.720
GSPATP00020703001 Paramecium tetraurelia GSPATP00020703001 N 0.720
estExt_fgenesh2_kg.C_20130 Agaricus bisporus estExt_fgenesh2_kg.C_20130 N 0.740
estExt_fgenesh1_pg.C_190237 Phytophthora capsici estExt_fgenesh1_pg.C_190237 N 0.760
e_gw1.2.756.1 Heterobasidion annosum e_gw1.2.756.1 N 0.700
e_gw1.15.315.1 Tremella mesenterica e_gw1.15.315.1 N 0.700
e_gw1.12.287.1 Serpula lacrymans e_gw1.12.287.1 N 0.720
Skud_Contig1833.8 Saccharomyces kudriavzevii Skud_Contig1833.8 N 0.720
TGGT1_015210 Toxoplasma gondii TGGT1_015210 N 0.700
Q7YRC8_MACMU Macaca mulatta ENSMMUG00000017461 N 0.740
PNO1 Erinaceus europaeus ENSEEUG00000009611 N 0.740
LOC100061904 Equus caballus ENSECAG00000011263 N 0.740
Pno1 Dipodomys ordii ENSDORG00000006867 N 0.740
pno1 Danio rerio ENSDARG00000008502 N 0.760
PNO1 Cavia porcellus ENSCPOG00000010130 N 0.740
ENSCJAG00000022611 Callithrix jacchus ENSCJAG00000022611 N 0.700
LOC100389955 Callithrix jacchus ENSCJAG00000006564 N 0.740
PNO1 Canis familiaris ENSCAFG00000003256 N 0.740
PNO1 Homo sapiens ENSG00000115946 N 0.740
PNO1 Gasterosteus aculeatus ENSGACG00000012047 N 0.720
XM_001110046.1 Macaca mulatta ENSMMUG00000003556 N 0.700
PNO1 Myotis lucifugus ENSMLUG00000010850 N 0.740
PNO1 Microcebus murinus ENSMICG00000010897 N 0.740
PNO1 Meleagris gallopavo ENSMGAG00000004514 N 0.760
PNO1 Macropus eugenii ENSMEUG00000004504 N 0.740
PNO1 Loxodonta africana ENSLAFG00000000046 N 0.740
PNO1 Gorilla gorilla ENSGGOG00000009158 N 0.740
PNO1_CHICK Gallus gallus ENSGALG00000009093 N 0.760
PNO1_BOVIN Bos taurus ENSBTAG00000010604 N 0.740
PNO1 Anolis carolinensis ENSACAG00000001218 N 0.740
BGIOSIBCE009391 Oryza indica BGIOSIBCE009391 N 1.000
PITG_01680 Phytophthora infestans PITG_01680 N 0.760
orf19.7618 Candida albicans orf19.7618 N 0.700
LELG_05249 Lodderomyces elongisporus LELG_05249 N 0.700
DEHA0G05258g Debaryomyces hansenii DEHA0G05258g N 0.700
CTRG_05813 Candida tropicalis CTRG_05813 N 0.700
CPAG_01545 Candida parapsilosis CPAG_01545 N 0.700
CLUG_01545 Candida lusitaniae CLUG_01545 N 0.700
AMAG_14219 Allomyces macrogynus AMAG_14219 N 0.740
RO3G_00885 Rhizopus oryzae RO3G_00885 N 0.720
RO3G_05288 Rhizopus oryzae RO3G_05288 N 0.720
AT3G13230 Arabidopsis thaliana AT3G13230-TAIR-G N 0.880
nasonia_NCBI_hmm120183 Nasonia vitripennis nasonia_NCBI_hmm120183 N 0.760
DGIL_AUG5s4501g8t1 Acyrtosiphon pisum DGIL_AUG5s4501g8t1 N 0.740
amel4_ncbi_hmm14037 Apis mellifera amel4_ncbi_hmm14037 N 0.700
PK08146.1 Cannabis sativa PK08146.1 N 0.920
UM03495 Ustilago maydis UM03495 N 0.700
SPRG_02415 Saprolegnia parasitica SPRG_02415 N 0.780
SPPG_04498 Spizellomyces punctatus SPPG_04498 N 0.740
AMAG_12889 Allomyces macrogynus AMAG_12889 N 0.740
XM_001095777.1 Macaca mulatta ENSMMUG00000030357 N 0.740
PY03646 Plasmodium yoelii PY03646 N 0.720
PNO1 Saccharomyces cerevisiae YOR145C N 0.720
rbp28 Schizosaccharomyces pombe SPAC2C4.11c N 0.700
XM_002882767.1 Arabidopsis lyrata scaffold_301521.1 N 0.880
SB03G036840 Sorghum bicolor Sb03g036840 N 1.000
B9N5M8_POPTR Populus trichocarpa POPTR_0011s16880 N 0.920
B9GHH7_POPTR Populus trichocarpa POPTR_0001s47320 N 0.920
PHUM356890 Pediculus humanus PHUM356890 N 0.720
LOC_Os03g02420 Oryza sativa LOC_Os03g02420 N 1.000
cgd8_1650 Cryptosporidium parvum cgd8_1650 N 0.706
Chro.80193 Cryptosporidium hominis Chro.80193 N 0.706
PVX_117000 Plasmodium vivax PVX_117000 N 0.720
PKH_123590 Plasmodium knowlesi PKH_123590 N 0.720
PF14_0661 Plasmodium falciparum PF14_0661 N 0.720
PCHAS_133710 Plasmodium chabaudi PCHAS_133710 N 0.720
PBANKA_133250 Plasmodium berghei PBANKA_133250 N 0.720
NCLIV_012590 Neospora caninum NCLIV_012590 N 0.700
LmxM34.3540 Leishmania mexicana LmxM34.3540 N 0.700
CMU_025600 Cryptosporidium muris CMU_025600 N 0.745
LOC_Os01g57910 Oryza sativa LOC_Os01g57910 N 1.000
GSVIVG00008219001 Vitis vinifera GSVIVG00008219001 N 0.780
XM_002894480.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004221 N 0.796
ENSPPYG00000012353 Pongo pygmaeus ENSPPYG00000012353 N 0.740
PNO1 Procavia capensis ENSPCAG00000016146 N 0.740
Q6VBQ6_ORYLA Oryzias latipes ENSORLG00000002371 N 0.760
PNO1 Ochotona princeps ENSOPRG00000009643 N 0.740
ENSOCUG00000022236 Oryctolagus cuniculus ENSOCUG00000022236 N 0.740
ENSOCUG00000006100 Oryctolagus cuniculus ENSOCUG00000006100 N 0.740
PNO1 Ornithorhynchus anatinus ENSOANG00000008388 N 0.740
Pno1 Mus musculus ENSMUSG00000020116 N 0.720
PNO1 Pan troglodytes ENSPTRG00000011999 N 0.740
PNO1 Pteropus vampyrus ENSPVAG00000012695 N 0.740
pno1 Xenopus tropicalis ENSXETG00000017349 N 0.760
PNO1 Vicugna pacos ENSVPAG00000012083 N 0.740
PNO1 Tursiops truncatus ENSTTRG00000014002 N 0.740
PNO1 Takifugu rubripes ENSTRUG00000012470 N 0.740
PNO1 Tetraodon nigroviridis ENSTNIG00000009825 N 0.740
PNO1 Taeniopygia guttata ENSTGUG00000002369 N 0.780
PNO1 Sus scrofa ENSSSCG00000008352 N 0.740
Pno1 Rattus norvegicus ENSRNOG00000005524 N 0.740
PNO1 Monodelphis domestica ENSMODG00000003567 N 0.740