KHSRP (Sus scrofa)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSSSCG00000013538 T19506_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		1.000
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		1.000
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		1.000
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000014384 KH 146 208
ENSSSCP00000014384 KH 235 299
ENSSSCP00000014384 KH 324 386
ENSSSCP00000014384 KH 426 491

Links

Other KH family RBPs
Other Sus scrofa RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
KHSRP Homo sapiens ENSG00000088247 D 1.000
ENSPPYG00000019172 Pongo pygmaeus ENSPPYG00000019172 I 0.856
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.774
KHSRP Pan troglodytes ENSPTRG00000010364 I 1.000
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.996
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.770
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.770
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 1.000
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.763
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 1.000
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.774
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.770
FUBP1 Oryctolagus cuniculus ENSOCUG00000002225 I 0.710
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.770
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.992
ENSORLG00000003540 Oryzias latipes ENSORLG00000003540 I 0.716
KHSRP Oryzias latipes ENSORLG00000011882 I 0.809
KHSRP Procavia capensis ENSPCAG00000000246 I 0.844
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.770
AAN77161 Xenopus laevis AAN77161 I 0.728
FUBP1 Taeniopygia guttata ENSTGUG00000006841 I 0.749
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.767
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 1.000
AAH44277 Xenopus laevis AAH44277 I 0.751
AAH70981 Xenopus laevis AAH70981 I 0.747
AAI61696 Xenopus laevis AAI61696 I 0.922
AAI69815 Xenopus laevis AAI69815 I 0.747
AAI69923 Xenopus laevis AAI69923 I 0.926
AAN77160 Xenopus laevis AAN77160 I 0.926
khsrp Xenopus tropicalis ENSXETG00000021862 I 0.837
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.755
KHSRP Tetraodon nigroviridis ENSTNIG00000014067 I 0.802
ENSTRUG00000004615 Takifugu rubripes ENSTRUG00000004615 I 0.712
KHSRP Takifugu rubripes ENSTRUG00000010395 I 0.809
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.763
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.770
KHSRP Tursiops truncatus ENSTTRG00000010390 I 1.000
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.770
KHSRP Vicugna pacos ENSVPAG00000010837 I 0.767
KHSRP Ornithorhynchus anatinus ENSOANG00000000261 I 0.891
Fubp1 Mus musculus ENSMUSG00000028034 I 0.770
LOC100065608 Equus caballus ENSECAG00000018305 I 1.000
FUBP1 Equus caballus ENSECAG00000010867 I 0.770
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.770
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.996
KHSRP Dasypus novemcinctus ENSDNOG00000009590 I 0.904
fubp1 Danio rerio ENSDARG00000029248 I 0.716
KHSRP Danio rerio ENSDARG00000026489 I 0.914
KHSRP Cavia porcellus ENSCPOG00000005140 I 1.000
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.770
KHSRP Callithrix jacchus ENSCJAG00000016627 I 1.000
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.770
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.767
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.770
KHSRP Canis familiaris ENSCAFG00000018667 I 1.000
LOC505564 Bos taurus ENSBTAG00000021018 I 1.000
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.770
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.996
KHSRP Echinops telfairi ENSETEG00000004793 I 0.891
KHSRP Felis catus ENSFCAG00000003731 I 1.000
FUBP1 Homo sapiens ENSG00000162613 I 0.774
Khsrp Mus musculus ENSMUSG00000007670 I 0.996
KHSRP Monodelphis domestica ENSMODG00000001952 I 0.934
KHSRP Macaca mulatta ENSMMUG00000005597 I 1.000
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.774
KHSRP Myotis lucifugus ENSMLUG00000015543 I 0.848
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.770
KHSRP Microcebus murinus ENSMICG00000007863 I 0.984
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.759
KHSRP Macropus eugenii ENSMEUG00000016601 I 0.953
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.770
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.996
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.774
KHSRP Gorilla gorilla ENSGGOG00000007028 I 1.000
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.761
KHSRP Gasterosteus aculeatus ENSGACG00000018990 I 0.860
ENSGACG00000016563 Gasterosteus aculeatus ENSGACG00000016563 I 0.714
KHSRP Gasterosteus aculeatus ENSGACG00000012422 I 0.872
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.763