amel4_ncbi_hmm6583 (Apis mellifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 amel4_ncbi_hmm6583 T31937_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.891
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.891
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm6583 RRM 6 68
amel4_ncbi_hmm6583 RRM 126 191

Links

Other RRM family RBPs
Other Apis mellifera RBPs

122 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF5 Homo sapiens ENSG00000100650 D 0.705
B52 Drosophila melanogaster FBgn0004587 D 0.891
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.721
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.713
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.713
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.736
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.713
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.736
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.713
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.736
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.705
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.744
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.752
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.705
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.736
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.752
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.705
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.721
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.744
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.752
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.736
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.752
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.705
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.744
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.752
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.705
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.729
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.705
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.729
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.752
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.705
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.721
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.744
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.767
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.736
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.767
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.845
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.798
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.721
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.845
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.705
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.752
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.783
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.783
AAH44265 Xenopus laevis AAH44265 I 0.736
AAH71160 Xenopus laevis AAH71160 I 0.705
PHUM290500 Pediculus humanus PHUM290500 I 0.845
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.705
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.729
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.884
GF17608 Drosophila ananassae FBgn0094626 I 0.891
GH18528 Drosophila grimshawi FBgn0125995 I 0.884
GI22065 Drosophila mojavensis FBgn0144794 I 0.884
GL23543 Drosophila persimilis FBgn0161133 I 0.884
GJ24113 Drosophila virilis FBgn0211197 I 0.884
GK13948 Drosophila willistoni FBgn0215954 I 0.891
ISCW002531 Ixodes scapularis ISCW002531 I 0.767
ISCW010321 Ixodes scapularis ISCW010321 I 0.822
ISCW010322 Ixodes scapularis ISCW010322 I 0.744
ISCW014220 Ixodes scapularis ISCW014220 I 0.752
AAH46668 Xenopus laevis AAH46668 I 0.729
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.899
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.752
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.705
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.744
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.705
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.752
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.721
srsf6a Danio rerio ENSDARG00000013729 I 0.713
srsf6b Danio rerio ENSDARG00000016783 I 0.705
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.752
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.744
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.744
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.752
LOC100053264 Equus caballus ENSECAG00000026873 I 0.705
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.721
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.721
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.814
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.891
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.891
AAEL012621 Aedes aegypti AAEL012621 I 0.806
AGAP004592 Anopheles gambiae AGAP004592 I 0.891
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.899
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.736
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.713
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.713
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.736
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.705
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.752
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.705
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.752
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.729
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.752
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.705
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.736
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.752
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.713
Srsf6 Mus musculus ENSMUSG00000016921 I 0.729
Srsf5 Mus musculus ENSMUSG00000021134 I 0.705
Srsf4 Mus musculus ENSMUSG00000028911 I 0.752
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.752
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.705
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.705
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.705
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.744
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.713
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.705
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.736
SRSF5 Felis catus ENSFCAG00000008848 I 0.705
SRSF4 Homo sapiens ENSG00000116350 I 0.752
SRSF6 Homo sapiens ENSG00000124193 I 0.744
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.744
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.729
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.705
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.705
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.744
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.705
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.752
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.736
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.752
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.705
Aqu1.218342 Amphimedon queenslandica Aqu1.218342 N 0.721