CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MYEF2
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000001875
T35474_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000003420
RRM
102
172
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRVSGVVEFKDEEFVKKALETMNKYDLSGRPLN
ENSCJAP00000003420
RRM
235
304
IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMH
ENSCJAP00000003420
RRM
501
569
IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGREID
ENSCJAP00000003429
RRM
102
172
VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLN
ENSCJAP00000003429
RRM
235
304
IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQSISMFNGQFLFDRPMH
ENSCJAP00000003429
RRM
525
593
IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGREID
ENSCJAP00000046043
RRM
102
125
VFISNIPYDMKWQAIKDLMREKGC
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CADANIAG00004740
Aspergillus nidulans
CADANIAG00004740
D
0.000
PMAA_072470
Penicillium marneffei
PMAA_072470
I
0.000
estExt_fgenesh3_kg.C_70295
Neurospora discreta
estExt_fgenesh3_kg.C_70295
I
0.000
e_gw1.3.1071.1
Trichoderma reesei
e_gw1.3.1071.1
I
0.000
e_gw1.1.2591.1
Trichoderma atroviride
e_gw1.1.2591.1
I
0.000
NCU03099
Neurospora crassa
NCU03099
I
0.000
NFIA_053730
Neosartorya fischeri
CADNFIAG00004585
I
0.000
ATEG_05852
Aspergillus terreus
CADATEAG00002953
I
0.000
AO090003000122
Aspergillus oryzae
CADAORAG00000798
I
0.000
An11g02050
Aspergillus niger
CADANGAG00008541
I
0.000
estExt_Genewise1.C_320079
Cochliobolus heterostrophus C5
estExt_Genewise1.C_320079
I
0.000
estExt_Genewise1Plus.C_50687
Neurospora tetrasperma
estExt_Genewise1Plus.C_50687
I
0.000
Pc12g10950
Penicillium chrysogenum
Pc12g10950
I
0.000
Pa_1_11770
Podospora anserina
Pa_1_11770
I
0.000
gw1.6.1720.1
Cryphonectria parasitica
gw1.6.1720.1
I
0.000
GSTUMT00010522001
Tuber melanosporum
GSTUMT00010522001
I
0.000
fgenesh1_pm.00118_#_519
Aspergillus carbonarius
fgenesh1_pm.00118_#_519
I
0.000
AB09441.1
Alternaria brassicicola
AB09441.1
I
0.000
EAT76715.1
Phaeosphaeria nodorum
EAT76715.1
I
0.000
gw1.33.170.1
Trichoderma virens
gw1.33.170.1
I
0.000
fgenesh1_pg.sca_1_chr1_3_0000264
Nectria haematococca
fgenesh1_pg.sca_1_chr1_3_0000264
I
0.000
AFUA_6G08040
Aspergillus fumigatus
CADAFUAG00002290
I
0.000
AFLA_036830
Aspergillus flavus
CADAFLAG00003057
I
0.000
HCAG_05883
Histoplasma capsulatum
HCAG_05883
I
0.000
GLRG_01583
Colletotrichum graminicola
GLRG_01583
I
0.000
FVEG_01237
Fusarium verticillioides
FVEG_01237
I
0.000
FOXG_00280
Fusarium oxysporum
FOXG_00280
I
0.000
FGSG_11902
Fusarium graminearum
FGSG_11902
I
0.000
CPSG_02060
Coccidioides posadasii
CPSG_02060
I
0.000
CIMG_01152
Coccidioides immitis
CIMG_01152
I
0.000
BDBG_03382
Blastomyces dermatitidis
BDBG_03382
I
0.000
BC1G_02746
Botrytis cinerea
BC1G_02746
I
0.000
MCYG_08625
Microsporum canis
MCYG_08625
I
0.000
PABG_01757
Paracoccidioides brasiliensis
PABG_01757
I
0.000
ACLA_082600
Aspergillus clavatus
CADACLAG00007506
I
0.000
VDAG_04412
Verticillium dahliae
VDAG_04412
I
0.000
UREG_01087
Uncinocarpus reesii
UREG_01087
I
0.000
TRV_04123
Trichophyton verrucosum
TRV_04123
I
0.000
TESG_08545
Trichophyton tonsurans
TESG_08545
I
0.000
TERG_02769
Trichophyton rubrum
TERG_02769
I
0.000
TEQG_04534
Trichophyton equinum
TEQG_04534
I
0.000
SS1G_09871
Sclerotinia sclerotiorum
SS1G_09871
I
0.000
PTRG_02274
Pyrenophora tritici repentis
PTRG_02274
I
0.000
ARB_07912
Arthroderma benhamiae
ARB_07912
I
0.000