ENSMMUG00000003260 (Macaca mulatta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMMUG00000003260 T38818_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.955
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.955
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.955
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.955
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.955
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.955
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.955
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.955
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.955
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.955
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.739
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.739
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000004343 RRM 48 115
ENSMMUP00000004343 RRM 153 216

Links

Other RRM family RBPs
Other Macaca mulatta RBPs

102 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF9 Homo sapiens ENSG00000111786 D 0.744
SRSF1 Homo sapiens ENSG00000136450 D 0.955
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.744
SRSF1 Sorex araneus ENSSARG00000010949 I 0.955
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.744
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.955
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.955
GL22249 Drosophila persimilis FBgn0159841 I 0.742
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.932
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.857
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.909
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.909
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.955
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.744
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.737
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.903
ENSORLG00000005314 Oryzias latipes ENSORLG00000005314 I 0.742
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.955
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.744
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.955
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.729
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.744
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.955
SRSF1 Pteropus vampyrus ENSPVAG00000000519 I 0.761
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.744
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.894
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.955
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.947
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.750
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.722
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.750
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.955
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.744
Minc04015 Meloidogyne incognita Minc04015 I 0.707
Minc06188 Meloidogyne incognita Minc06188 I 0.707
Smp_185230 Schistosoma mansoni Smp_185230 I 0.722
AAH42354 Xenopus laevis AAH42354 I 0.947
AAI23123 Xenopus laevis AAI23123 I 0.947
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.803
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.803
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.750
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.947
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.742
GF16525 Drosophila ananassae FBgn0093546 I 0.735
GH18077 Drosophila grimshawi FBgn0125545 I 0.735
GK13511 Drosophila willistoni FBgn0215519 I 0.735
GE26323 Drosophila yakuba FBgn0243353 I 0.735
ISCW014398 Ixodes scapularis ISCW014398 I 0.803
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.750
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.780
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.803
AAI28932 Xenopus laevis AAI28932 I 0.947
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.750
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.744
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.955
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.955
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.758
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.909
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.856
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.955
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.744
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.955
ENSCSAVG00000006093 Ciona savignyi ENSCSAVG00000006093 I 0.742
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.955
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.737
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.939
LOAG_10275 Loa loa LOAG_10275 I 0.727
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.765
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.758
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.773
AAEL006473 Aedes aegypti AAEL006473 I 0.750
AGAP010496 Anopheles gambiae AGAP010496 I 0.758
CBN06053 Caenorhabditis brenneri CBN06053 I 0.705
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.750
CRE13382 Caenorhabditis remanei CRE13382 I 0.705
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.739
srsf1a Danio rerio ENSDARG00000057691 I 0.924
SRSF1 Dasypus novemcinctus ENSDNOG00000011737 I 0.799
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.744
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.955
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.955
SRSF9 Monodelphis domestica ENSMODG00000003146 I 0.731
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.955
Srsf1 Mus musculus ENSMUSG00000018379 I 0.955
Srsf9 Mus musculus ENSMUSG00000029538 I 0.744
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.955
ENSOCUG00000010894 Oryctolagus cuniculus ENSOCUG00000010894 I 0.765
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.955
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.955
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.744
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.955
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.744
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.744
LOC100056763 Equus caballus ENSECAG00000016654 I 0.955
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.955
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.939
SRSF1 Felis catus ENSFCAG00000002250 I 0.799
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.909
SRSF9 Gasterosteus aculeatus ENSGACG00000016921 I 0.701
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.886
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.955
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.744