LOC_Os11g45590 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os11g45590 T45160_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os11g45590.1 RRM 217 242
LOC_Os11g45590.1 RRM 248 292
LOC_Os11g45590.1 RRM 337 407
LOC_Os11g45590.1 RRM 472 533
LOC_Os11g45590.2 RRM 216 241
LOC_Os11g45590.2 RRM 247 291
LOC_Os11g45590.2 RRM 336 406
LOC_Os11g45590.2 RRM 471 532
LOC_Os11g45590.3 RRM 34 59
LOC_Os11g45590.3 RRM 66 109
LOC_Os11g45590.3 RRM 154 224
LOC_Os11g45590.3 RRM 289 350

Links

Other RRM family RBPs
Other Oryza sativa RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa006486m Prunus persica ppa006486m N 0.741
mgf009246m Mimulus guttatus mgf009246m N 0.721
mgf007385m Mimulus guttatus mgf007385m N 0.833
mgf004253m Mimulus guttatus mgf004253m N 0.833
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.746
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.808
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.807
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.754
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.750
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.714
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.757
mgf010551m Mimulus guttatus mgf010551m N 0.824
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.912
MDP0000306572 Malus x domestica MDP0000306572 N 0.849
MDP0000288579 Malus x domestica MDP0000288579 N 0.730
MDP0000194332 Malus x domestica MDP0000194332 N 0.854
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.702
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.811
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.834
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.834
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.822
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.922
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.941
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.752
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.854
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.873
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.837
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.835
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.839
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.823
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.932
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.966
BGIOSIBCE035101 Oryza indica BGIOSIBCE035101 N 0.765
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.990
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.835
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.727
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.845
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.845
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.845
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.845
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.845
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.859
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.859
SB05G026740 Sorghum bicolor Sb05g026740 N 0.937
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.840
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.845
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.834