estExt_fgenesh2_pg.C_7640002 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pg.C_7640002 T50886_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.887
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.873
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_7640002 RRM 314 384

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM42 Homo sapiens ENSG00000126254 D 0.873
CG2931 Drosophila melanogaster FBgn0037342 D 0.704
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.887
PHUM106890 Pediculus humanus PHUM106890 I 0.831
B9I5N8_POPTR Populus trichocarpa POPTR_0013s04390 I 0.718
B9IPA5_POPTR Populus trichocarpa POPTR_0019s03570 I 0.732
Ppa-tag-262 Pristionchus pacificus PPA14507 I 0.732
Sb02g038420 Sorghum bicolor Sb02g038420 I 0.732
SB04G026430 Sorghum bicolor Sb04g026430 I 0.746
tag-262 Caenorhabditis elegans Y54H5A.3 I 0.761
29680.m001693 Ricinus communis 29680.m001693 I 0.732
76581 Helobdella robusta 76581 I 0.803
Aqu1.218430 Amphimedon queenslandica Aqu1.218430 I 0.761
LOC_Os08g45240 Oryza sativa LOC_Os08g45240 I 0.732
LOC_Os02g40900 Oryza sativa LOC_Os02g40900 I 0.718
GSVIVG00023509001 Vitis vinifera GSVIVG00023509001 I 0.732
GA15528-RA Drosophila pseudoobscura FBgn0075545 I 0.718
GF11626 Drosophila ananassae FBgn0088666 I 0.704
GH22277 Drosophila grimshawi FBgn0129737 I 0.718
GI23084 Drosophila mojavensis FBgn0145811 I 0.718
GL22151 Drosophila persimilis FBgn0159743 I 0.718
GM10617 Drosophila sechellia FBgn0165563 I 0.704
GJ22705 Drosophila virilis FBgn0209809 I 0.718
GK12952 Drosophila willistoni FBgn0214961 I 0.718
GE24162 Drosophila yakuba FBgn0241294 I 0.704
XM_002884402.1 Arabidopsis lyrata fgenesh2_kg.3__407__AT3G04500.1 I 0.746
GSVIVG00016104001 Vitis vinifera GSVIVG00016104001 I 0.704
cassava22669.valid.m1 Manihot esculenta cassava22669.valid.m1 I 0.732
Cucsa.178480 Cucumis sativus Cucsa.178480 I 0.732
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.873
AAI29698 Xenopus laevis AAI29698 I 0.873
LjSGA_021949.1 Lotus japonicus LjSGA_021949.1 I 0.718
MDP0000283678 Malus x domestica MDP0000283678 I 0.718
MDP0000320908 Malus x domestica MDP0000320908 I 0.718
Minc13155 Meloidogyne incognita Minc13155 I 0.746
PDK_20s1301681g005 Phoenix dactylifera PDK_20s1301681g005 I 0.704
PDK_20s1323974g003 Phoenix dactylifera PDK_20s1323974g003 I 0.704
ppa010477m Prunus persica ppa010477m I 0.718
XP_002167334.1 Hydra magnipapillata XP_002167334.1 I 0.803
A2VDB3 Xenopus laevis A2VDB3 I 0.873
BGIBMGA005213 Bombyx mori BGIBMGA005213 I 0.732
Medtr1g093610 Medicago truncatula Medtr1g093610 I 0.718
GRMZM2G125529 Zea mays GRMZM2G125529 I 0.761
e_gw1.16.225.1 Lottia gigantea e_gw1.16.225.1 I 0.803
e_gw1.30.201.1 Daphnia pulex e_gw1.30.201.1 I 0.803
e_gw.92.129.1 Nematostella vectensis e_gw.92.129.1 I 0.775
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 1.000
estExt_Genewise1Plus.C_1180017 Capitella teleta estExt_Genewise1Plus.C_1180017 I 0.831
Glyma10g30900.1 Glycine max Glyma10g30900.1 I 0.732
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.718
Glyma20g36570.1 Glycine max Glyma20g36570.1 I 0.732
GP3.076550 Batrachochytrium dendrobatidis GP3.076550 I 0.746
mgf021739m Mimulus guttatus mgf021739m I 0.732
GRMZM2G068255 Zea mays GRMZM2G068255 I 0.732
AAI29577 Xenopus laevis AAI29577 I 0.831
AGAP010200 Anopheles gambiae AGAP010200 I 0.775
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.873
RBM42 Canis familiaris ENSCAFG00000006925 I 0.873
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.775
PTSG_04228 Salpingoeca rosetta PTSG_04228 I 0.704
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.873
rbm42 Danio rerio ENSDARG00000039910 I 0.873
LOC100051102 Equus caballus ENSECAG00000018215 I 0.873
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.873
RBM42 Felis catus ENSFCAG00000006376 I 0.746
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.887
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.873
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.901
AAEL010642 Aedes aegypti AAEL010642 I 0.761
CJA09414 Caenorhabditis japonica CJA09414 I 0.746
AT3G04500 Arabidopsis thaliana AT3G04500-TAIR-G I 0.746
BGIOSIBCE007866 Oryza indica BGIOSIBCE007866 I 0.732
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.831
amel4_ncbi_hmm2520 Apis mellifera amel4_ncbi_hmm2520 I 0.789
BGIOSIBCE028936 Oryza indica BGIOSIBCE028936 I 0.732
BRADI3G12840 Brachypodium distachyon BRADI3G12840 I 0.746
PK16312.1 Cannabis sativa PK16312.1 I 0.746
BRADI3G49130 Brachypodium distachyon BRADI3G49130 I 0.746
CBG21313 Caenorhabditis briggsae CBG21313 I 0.761
CBN12017 Caenorhabditis brenneri CBN12017 I 0.761
WUBG_05387 Wuchereria bancrofti WUBG_05387 I 0.789
CRE29329 Caenorhabditis remanei CRE29329 I 0.761
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.873
Rbm42 Mus musculus ENSMUSG00000036733 I 0.873
RBM42 Sus scrofa ENSSSCG00000002905 I 0.873
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.873
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.873
RBM42 Oryzias latipes ENSORLG00000003387 I 0.887
RBM42 Procavia capensis ENSPCAG00000013053 I 0.873
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.873
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.873
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.873
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.873
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.873
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.873
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.873
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.873
LOAG_04208 Loa loa LOAG_04208 I 0.789
Bm1_40380 Brugia malayi Bm1_40380 I 0.789
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.873
ENSMEUG00000003054 Macropus eugenii ENSMEUG00000003054 I 0.789
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.873
RBM42 Microcebus murinus ENSMICG00000009880 I 0.873
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.873
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.887
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.887
RBM42 Sorex araneus ENSSARG00000010724 I 0.873
XP_784687.2 Strongylocentrotus purpuratus XP_784687.2 N 0.704
XP_001184429.1 Strongylocentrotus purpuratus XP_001184429.1 N 0.704
XP_001191950.1 Strongylocentrotus purpuratus XP_001191950.1 N 0.704
gw1.11.504.1 Chlorella vulgaris gw1.11.504.1 N 0.718
XP_786306.2 Strongylocentrotus purpuratus XP_786306.2 N 0.704
GSPATP00035306001 Paramecium tetraurelia GSPATP00035306001 N 0.704
e_gw1.12.447.1 Coccomyxa C 169 e_gw1.12.447.1 N 0.718
TGGT1_017860 Toxoplasma gondii TGGT1_017860 N 0.732
TGME49_003080 Toxoplasma gondii TGME49_003080 N 0.732
TGVEG_046310 Toxoplasma gondii TGVEG_046310 N 0.732
SNAPOd2T00026674001 Oikopleura dioica SNAPOd2T00026674001 N 0.795
estExtDG_fgenesh_newKGs_kg.C_110065 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_110065 N 0.718
estExt_fgenesh2_pg.C_90157 Monosiga brevicollis estExt_fgenesh2_pg.C_90157 N 0.704
estExt_Genewise1.C_30147 Volvox carteri estExt_Genewise1.C_30147 N 0.732
RBM42 Loxodonta africana ENSLAFG00000014993 N 0.761
pasa_Sanger_mRNA18521 Chlamydomonas reinhardtii pasa_Sanger_mRNA18521 N 0.704
Sjc_0014630 Schistosoma japonicum Sjc_0014630 N 0.704
NCLIV_021850 Neospora caninum NCLIV_021850 N 0.732