ENSCJAG00000018832 (Callithrix jacchus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSCJAG00000018832 T16787_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.915
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.915
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.847
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.847
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.847
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.833
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000034969 CSD 50 119

Links

Other CSD family RBPs
Other Callithrix jacchus RBPs

180 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.861
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.889
AAA49715 Xenopus laevis AAA49715 I 0.889
AAA49716 Xenopus laevis AAA49716 I 0.847
AAA49924 Xenopus laevis AAA49924 I 0.847
AAEL001375 Aedes aegypti AAEL001375 I 0.718
AAH41191 Xenopus laevis AAH41191 I 0.889
AAH42217 Xenopus laevis AAH42217 I 0.889
AAI06324 Xenopus laevis AAI06324 I 0.889
AAI30161 Xenopus laevis AAI30161 I 0.889
AAI55914 Xenopus laevis AAI55914 I 0.847
AAI55915 Xenopus laevis AAI55915 I 0.847
AAI69704 Xenopus laevis AAI69704 I 0.847
AGAP006108 Anopheles gambiae AGAP006108 I 0.718
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.761
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.761
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.761
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.732
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.746
CAA42778 Xenopus laevis CAA42778 I 0.889
CSDA Monodelphis domestica ENSMODG00000018248 I 0.875
CSDA Macaca mulatta ENSMMUG00000022469 I 0.889
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.889
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.889
CSDA Loxodonta africana ENSLAFG00000017247 I 0.889
CSDA Microcebus murinus ENSMICG00000004602 I 0.764
CSDA Echinops telfairi ENSETEG00000002557 I 0.889
CSDA Homo sapiens ENSG00000060138 I 0.889
Csda Dipodomys ordii ENSDORG00000009103 I 0.889
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.889
Csda Mus musculus ENSMUSG00000030189 I 0.889
CSDA Sus scrofa ENSSSCG00000000633 I 0.889
CSDA Cavia porcellus ENSCPOG00000011329 I 0.889
CSDA Procavia capensis ENSPCAG00000001397 I 0.845
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.889
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.889
Csda Rattus norvegicus ENSRNOG00000005480 I 0.889
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.889
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.889
CSDA Pan troglodytes ENSPTRG00000004681 I 0.889
CSDA Vicugna pacos ENSVPAG00000000876 I 0.764
csda Xenopus tropicalis ENSXETG00000016239 I 0.847
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.761
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.761
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.861
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.847
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.889
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.795
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.803
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.746
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.746
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.789
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.861
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.746
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.817
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.764
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.847
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.831
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.833
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.718
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.889
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.750
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.889
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.903
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.889
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.833
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.778
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.889
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.718
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.887
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.814
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.861
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.889
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.875
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.833
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.889
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.736
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.889
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.861
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.746
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.875
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.803
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.847
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.761
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.831
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.889
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.778
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.778
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.718
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.803
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.819
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.732
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.732
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.718
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.746
GD12750 Drosophila simulans FBgn0184477 I 0.732
GE20150 Drosophila yakuba FBgn0237472 I 0.732
GF10852 Drosophila ananassae FBgn0087892 I 0.746
GH16919 Drosophila grimshawi FBgn0124390 I 0.746
GI13673 Drosophila mojavensis FBgn0136428 I 0.746
GJ14010 Drosophila virilis FBgn0201228 I 0.746
GK16710 Drosophila willistoni FBgn0218712 I 0.746
GL15684 Drosophila persimilis FBgn0153288 I 0.746
GM24682 Drosophila sechellia FBgn0179545 I 0.732
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.746
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.718
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.718
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.803
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.718
ISCW005281 Ixodes scapularis ISCW005281 I 0.746
LOC100065107 Equus caballus ENSECAG00000013777 I 0.889
LOC100067336 Equus caballus ENSECAG00000023592 I 0.889
LOC100072964 Equus caballus ENSECAG00000009996 I 0.861
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.889
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.889
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.861
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.761
P21573 Xenopus laevis P21573 I 0.889
P21574 Xenopus laevis P21574 I 0.847
P45441 Xenopus laevis P45441 I 0.847
PHUM156710 Pediculus humanus PHUM156710 I 0.746
PHUM156720 Pediculus humanus PHUM156720 I 0.732
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.718
Q00436 Xenopus laevis Q00436 I 0.889
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.750
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.889
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.778
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.889
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.889
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.704
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.746
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.746
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.761
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.789
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.789
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.761
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.875
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.889
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.847
YB-1 Homo sapiens ENSG00000065978 D 0.889
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.889
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.889
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.889
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.708
ybx1 Danio rerio ENSDARG00000004757 I 0.889
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.889
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.889
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.889
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.889
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.789
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.746
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.889
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.761
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.889
Ybx1 Mus musculus ENSMUSG00000028639 I 0.889
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.889
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.889
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.833
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.889
YBX1 Microcebus murinus ENSMICG00000014984 I 0.889
YBX1 Sorex araneus ENSSARG00000012628 I 0.732
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.889
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.861
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.861
YBX2 Sus scrofa ENSSSCG00000017938 I 0.861
YBX2 Sorex araneus ENSSARG00000000488 I 0.847
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.861
YBX2 Procavia capensis ENSPCAG00000008019 I 0.861
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.861
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.847
Ybx2 Mus musculus ENSMUSG00000018554 I 0.861
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.831
YBX2 Homo sapiens ENSG00000006047 D 0.847
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.861
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.861
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.861
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.718
YBX2 Canis familiaris ENSCAFG00000016128 I 0.861
ybx2-a Xenopus laevis AAI69706 D 0.847
yps Drosophila melanogaster FBgn0022959 I 0.732