Ybx2 (Dipodomys ordii)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSDORG00000010882 T16819_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.833
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.817
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.817
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.806
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.806
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.806
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000010228 CSD 2 65

Links

Other CSD family RBPs
Other Dipodomys ordii RBPs

109 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.781
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.740
AAA49715 Xenopus laevis AAA49715 I 0.740
AAA49716 Xenopus laevis AAA49716 I 0.753
AAA49924 Xenopus laevis AAA49924 I 0.740
AAEL001375 Aedes aegypti AAEL001375 I 0.000
AAH41191 Xenopus laevis AAH41191 I 0.740
AAH42217 Xenopus laevis AAH42217 I 0.740
AAI06324 Xenopus laevis AAI06324 I 0.740
AAI30161 Xenopus laevis AAI30161 I 0.740
AAI55914 Xenopus laevis AAI55914 I 0.740
AAI55915 Xenopus laevis AAI55915 I 0.753
AAI69704 Xenopus laevis AAI69704 I 0.753
AGAP006108 Anopheles gambiae AGAP006108 I 0.000
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.000
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.000
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.000
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.000
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.000
Bm1_57515 Brugia malayi Bm1_57515 I 0.000
CAA42778 Xenopus laevis CAA42778 I 0.740
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.740
CSDA Macaca mulatta ENSMMUG00000022469 I 0.740
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.740
CSDA Loxodonta africana ENSLAFG00000017247 I 0.740
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.740
CSDA Cavia porcellus ENSCPOG00000011329 I 0.740
CSDA Microcebus murinus ENSMICG00000004602 I 0.848
Csda Dipodomys ordii ENSDORG00000009103 I 0.740
CSDA Homo sapiens ENSG00000060138 I 0.740
CSDA Echinops telfairi ENSETEG00000002557 I 0.740
CSDA Monodelphis domestica ENSMODG00000018248 I 0.726
Csda Mus musculus ENSMUSG00000030189 I 0.740
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.740
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.740
Csda Rattus norvegicus ENSRNOG00000005480 I 0.740
CSDA Sus scrofa ENSSSCG00000000633 I 0.740
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.740
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.740
csda Xenopus tropicalis ENSXETG00000016239 I 0.000
CSDA Vicugna pacos ENSVPAG00000000876 I 0.848
CSDA Pan troglodytes ENSPTRG00000004681 I 0.740
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.000
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.000
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.726
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.000
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.740
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.000
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.000
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.000
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.000
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.000
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.726
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.000
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.000
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.000
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.000
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.000
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.722
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.000
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.000
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.740
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.000
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.740
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.726
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.740
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.000
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.736
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.740
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.000
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.740
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.000
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.726
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.740
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.726
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.000
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.740
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.000
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.740
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.712
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.000
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.726
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.000
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.726
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.000
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.000
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.740
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.764
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.750
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.000
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.000
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.000
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.000
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.000
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.000
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.000
GD12750 Drosophila simulans FBgn0184477 I 0.000
GE20150 Drosophila yakuba FBgn0237472 I 0.000
GF10852 Drosophila ananassae FBgn0087892 I 0.000
GH16919 Drosophila grimshawi FBgn0124390 I 0.000
GI13673 Drosophila mojavensis FBgn0136428 I 0.000
GJ14010 Drosophila virilis FBgn0201228 I 0.000
GK16710 Drosophila willistoni FBgn0218712 I 0.000
GL15684 Drosophila persimilis FBgn0153288 I 0.000
GM24682 Drosophila sechellia FBgn0179545 I 0.000
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.000
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.000
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.000
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.000
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.000
ISCW005281 Ixodes scapularis ISCW005281 I 0.000
LOC100065107 Equus caballus ENSECAG00000013777 I 0.740
LOC100067336 Equus caballus ENSECAG00000023592 I 0.740
LOC100072964 Equus caballus ENSECAG00000009996 I 0.781
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.740
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.740
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.767
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.000
P21573 Xenopus laevis P21573 I 0.740
P21574 Xenopus laevis P21574 I 0.753
P45441 Xenopus laevis P45441 I 0.740
PHUM156710 Pediculus humanus PHUM156710 I 0.000
PHUM156720 Pediculus humanus PHUM156720 I 0.000
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.000
Q00436 Xenopus laevis Q00436 I 0.740
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.000
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.740
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.736
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.740
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.740
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.000
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.000
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.000
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.000
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.000
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.000
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.000
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.000
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.726
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.740
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.781
YB-1 Homo sapiens ENSG00000065978 D 0.740
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.740
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.740
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.740
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.740
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.740
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.740
ybx1 Danio rerio ENSDARG00000004757 I 0.740
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.740
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.000
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.000
Ybx1 Mus musculus ENSMUSG00000028639 I 0.740
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.740
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.740
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.000
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.000
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.740
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.740
YBX1 Microcebus murinus ENSMICG00000014984 I 0.740
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.740
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.740
YBX1 Sorex araneus ENSSARG00000012628 I 0.000
YBX2 Sus scrofa ENSSSCG00000017938 I 0.781
YBX2 Sorex araneus ENSSARG00000000488 I 0.767
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.781
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.781
Ybx2 Mus musculus ENSMUSG00000018554 I 0.806
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.792
YBX2 Homo sapiens ENSG00000006047 D 0.781
YBX2 Canis familiaris ENSCAFG00000016128 I 0.781
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.795
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.767
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.781
YBX2 Procavia capensis ENSPCAG00000008019 I 0.781
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.781
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.781
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.000
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.781
ybx2-a Xenopus laevis AAI69706 D 0.753
yps Drosophila melanogaster FBgn0022959 I 0.000