CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pcbp4
(
Mus musculus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSMUSG00000023495
T19126_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Pcbp3
M188_0.6
Mus musculus
UUUYCC
RNAcompete
Ray et al.(2013)
RNCMPT00215
0.742
pcbp2
M211_0.6
Danio rerio
WWUCCC
RNAcompete
Ray et al.(2013)
RNCMPT00246
0.716
PCBP2
M043_0.6
Homo sapiens
CCYYCCH
RNAcompete
Ray et al.(2013)
RNCMPT00044
0.716
Pcbp1
M207_0.6
Mus musculus
CYUUCC
RNAcompete
Ray et al.(2013)
RNCMPT00239
0.705
PCBP1
M177_0.6
Homo sapiens
CCWWHCC
RNAcompete
Ray et al.(2013)
RNCMPT00186
0.705
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000024260
KH
19
79
TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI
ENSMUSP00000024260
KH
103
166
TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQI
ENSMUSP00000024260
KH
243
305
SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLI
Links
Other
KH
family RBPs
Other
Mus musculus
RBPs
99 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AGAP004942
Anopheles gambiae
AGAP004942
N
0.000
amel4_ncbi_hmm16330
Apis mellifera
amel4_ncbi_hmm16330
I
0.000
BGIBMGA012503
Bombyx mori
BGIBMGA012503
N
0.000
DGIL_AUG5s5532g9t1
Acyrtosiphon pisum
DGIL_AUG5s5532g9t1
I
0.000
FBgn0262737
Drosophila melanogaster
FBgn0262737
N
0.000
fgenesh1_pm.C_scaffold_76000004
Capitella teleta
fgenesh1_pm.C_scaffold_76000004
I
0.000
GA20351-RA
Drosophila pseudoobscura
FBgn0080346
N
0.000
GE22592
Drosophila yakuba
FBgn0239809
N
0.000
GG16232
Drosophila erecta
FBgn0108467
N
0.000
GI13561
Drosophila mojavensis
FBgn0136316
N
0.000
GJ11921
Drosophila virilis
FBgn0199174
N
0.000
GK10610
Drosophila willistoni
FBgn0212625
N
0.000
ISCW016289
Ixodes scapularis
ISCW016289
I
0.000
nasonia_NCBI_hmm938274
Nasonia vitripennis
nasonia_NCBI_hmm938274
I
0.000
PASA_GEN_0700132
Daphnia pulex
PASA_GEN_0700132
I
0.000