CBN11651 (Caenorhabditis brenneri)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBN11651 T34024_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.986
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.739
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.739
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.739
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.739
asd-1
M171_0.6 		Caenorhabditis elegans WGCAUGH RNAcompete
Ray et al.(2013)
RNCMPT00180 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBN11651 RRM 156 224

Links

Other RRM family RBPs
Other Caenorhabditis brenneri RBPs

144 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
87505 Helobdella robusta 87505 I 0.000
A2BP1 Homo sapiens ENSG00000078328 D 0.739
a2bp1 Danio rerio ENSDARG00000014746 D 0.739
A2BP1 Gallus gallus ENSGALG00000007366 I 0.739
a2bp1 Drosophila melanogaster FBgn0052062 D 0.739
a2bp1 Xenopus tropicalis ENSXETG00000005126 I 0.000
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.739
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.739
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.739
A4F5G6 Xenopus laevis A4F5G6 I 0.725
AAEL017168 Aedes aegypti AAEL017168 I 0.739
AAI55921 Xenopus laevis AAI55921 I 0.710
AAI69563 Xenopus laevis AAI69563 I 0.710
AGAP006089 Anopheles gambiae AGAP006089 I 0.754
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.725
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.725
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.739
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.754
Bm1_08900 Brugia malayi Bm1_08900 I 0.855
CAL91350 Xenopus laevis CAL91350 I 0.725
CAL91351 Xenopus laevis CAL91351 I 0.725
CBG02108 Caenorhabditis briggsae CBG02108 I 0.971
CJA09998 Caenorhabditis japonica CJA09998 I 0.957
CRE07377 Caenorhabditis remanei CRE07377 I 0.986
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.000
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.739
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.725
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.710
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.725
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.725
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.768
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.710
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.725
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.725
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.725
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.710
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.739
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.739
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.725
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.739
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.710
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.725
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.739
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.725
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.739
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.710
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.739
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.739
e_gw1.11.67.1 Lottia gigantea e_gw1.11.67.1 I 0.000
fgeneshTA2_pg.C_scaffold_2000867 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000867 I 0.000
fox-1 Caenorhabditis elegans T07D1.4 D 0.986
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.739
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.725
FP236187.1 Danio rerio ENSDARG00000010083 I 0.725
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.725
GD14245 Drosophila simulans FBgn0185930 I 0.739
GE21749 Drosophila yakuba FBgn0238995 I 0.739
GF10597 Drosophila ananassae FBgn0087638 I 0.739
GG15438 Drosophila erecta FBgn0107689 I 0.739
GH14949 Drosophila grimshawi FBgn0122424 I 0.739
GI11474 Drosophila mojavensis FBgn0134235 I 0.739
GJ13667 Drosophila virilis FBgn0200888 I 0.739
GK12272 Drosophila willistoni FBgn0214282 I 0.739
GM25214 Drosophila sechellia FBgn0180074 I 0.739
gw.34.129.1 Nematostella vectensis gw.34.129.1 I 0.000
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.000
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.710
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.725
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.725
ISCW013123 Ixodes scapularis ISCW013123 I 0.710
LOAG_04679 Loa loa LOAG_04679 I 0.855
LOC100066233 Equus caballus ENSECAG00000012667 I 0.739
LOC100069362 Equus caballus ENSECAG00000018923 I 0.739
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.739
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.739
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.739
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.739
PHUM098700 Pediculus humanus PHUM098700 I 0.739
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.739
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.739
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.739
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.739
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.739
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.739
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.739
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.739
RBFOX1 Tarsius syrichta ENSTSYG00000005334 I 0.000
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.739
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.739
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.739
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.739
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.739
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.739
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.739
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.739
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.739
RBFOX1 Felis catus ENSFCAG00000008241 I 0.000
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.739
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.739
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.739
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.739
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.739
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.754
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.739
rbfox1l Danio rerio ENSDARG00000021184 I 0.710
RBFOX2 Microcebus murinus ENSMICG00000014135 I 0.000
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.739
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.739
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.739
RBFOX2 Spermophilus tridecemlineatus ENSSTOG00000014841 I 0.000
RBFOX2 Homo sapiens ENSG00000100320 I 0.739
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.739
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.739
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.739
RBFOX2 Gorilla gorilla ENSGGOG00000015598 I 0.000
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.739
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.739
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.739
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.739
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.739
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.739
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.739
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.739
RBFOX2 Macropus eugenii ENSMEUG00000001547 I 0.000
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.754
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.739
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.739
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.739
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.739
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.725
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.725
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.725
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.725
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.725
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.725
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.725
RBFOX3 Equus caballus ENSECAG00000023811 I 0.725
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.725
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.725
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.725
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.725
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.725
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.739
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.725
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.000
RBFOX3 Homo sapiens ENSG00000167281 I 0.725
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.725
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.739
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.739
RBM9 Gallus gallus ENSGALG00000012540 I 0.739
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.739
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.000
Smp_138880 Schistosoma mansoni Smp_138880 I 0.000
Smp_139980 Schistosoma mansoni Smp_139980 I 0.000
SNAPOd2T00019047001 Oikopleura dioica SNAPOd2T00019047001 I 0.000
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.855