Cucsa.301810 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.301810 T49625_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.760
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.301810.1 RRM 22 92
Cucsa.301810.1 RRM 115 186
Cucsa.301810.1 RRM 232 296
Cucsa.301810.2 RRM 22 92
Cucsa.301810.2 RRM 115 186
Cucsa.301810.2 RRM 232 296
Cucsa.301810.3 RRM 22 92
Cucsa.301810.3 RRM 115 186
Cucsa.301810.3 RRM 232 296
Cucsa.301810.4 RRM 22 92
Cucsa.301810.4 RRM 115 186
Cucsa.301810.4 RRM 230 294
Cucsa.301810.5 RRM 22 92
Cucsa.301810.5 RRM 115 186
Cucsa.301810.5 RRM 232 296
Cucsa.301810.6 RRM 22 92
Cucsa.301810.6 RRM 115 186
Cucsa.301810.6 RRM 232 296
Cucsa.301810.7 RRM 22 92
Cucsa.301810.7 RRM 115 186
Cucsa.301810.7 RRM 232 296
Cucsa.301810.8 RRM 22 92
Cucsa.301810.8 RRM 115 186
Cucsa.301810.8 RRM 232 296

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006434 Ricinus communis 30169.m006434 I 0.899
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.808
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.904
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.803
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.928
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.750
e_gw1.23.771.1 Selaginella moellendorfii e_gw1.23.771.1 I 0.702
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.750
fgenesh2_pg.C_scaffold_39000056 Selaginella moellendorfii fgenesh2_pg.C_scaffold_39000056 I 0.736
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.832
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.812
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.880
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.817
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.913
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.712
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.760
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.760
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.788
MDP0000123012 Malus x domestica MDP0000123012 N 0.803
MDP0000123414 Malus x domestica MDP0000123414 N 0.793
MDP0000276227 Malus x domestica MDP0000276227 I 0.899
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.875
mgf010468m Mimulus guttatus mgf010468m I 0.702
mgf023806m Mimulus guttatus mgf023806m I 0.798
PK28027.1 Cannabis sativa PK28027.1 I 0.942
ppa005940m Prunus persica ppa005940m I 0.889
SB01G045570 Sorghum bicolor Sb01g045570 I 0.827
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.817