MDP0000271231 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000271231 T57545_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000271231 RRM 18 79

Links

Other RRM family RBPs
Other Malus x domestica RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29983.m003293 Ricinus communis 29983.m003293 I 0.785
30170.m013735 Ricinus communis 30170.m013735 I 0.919
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.790
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.887
AT1G33470 Arabidopsis thaliana AT1G33470-TAIR-G N 0.726
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.710
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.779
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.765
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.919
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.855
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.823
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.839
BRADI2G61350 Brachypodium distachyon BRADI2G61350 N 0.710
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.806
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.706
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.706
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.839
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.952
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.952
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.779
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.823
CU179634_3 Medicago truncatula CU179634_3 I 0.701
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.735
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.919
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.790
Glyma01g15840.1 Glycine max Glyma01g15840.1 N 0.790
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.746
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.746
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.919
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.919
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.706
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.706
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.855
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.855
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.790
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.935
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.721
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.750
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.706
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.984
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.855
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.823
MDP0000138486 Malus x domestica MDP0000138486 I 0.701
MDP0000181802 Malus x domestica MDP0000181802 N 1.000
MDP0000284454 Malus x domestica MDP0000284454 I 0.706
MDP0000488395 Malus x domestica MDP0000488395 I 0.706
MDP0000548950 Malus x domestica MDP0000548950 I 0.721
MDP0000744398 Malus x domestica MDP0000744398 I 0.721
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.776
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.952
mgf002440m Mimulus guttatus mgf002440m N 0.903
mgf017214m Mimulus guttatus mgf017214m I 0.750
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.855
PK14266.1 Cannabis sativa PK14266.1 I 0.721
PK21213.1 Cannabis sativa PK21213.1 I 0.776
ppa009564m Prunus persica ppa009564m I 0.968
ppa009716m Prunus persica ppa009716m I 0.721
ppa016222m Prunus persica ppa016222m I 0.721
SB03G041530 Sorghum bicolor Sb03g041530 I 0.855
SB03G046430 Sorghum bicolor Sb03g046430 N 0.806
SB10G024450 Sorghum bicolor Sb10g024450 N 0.710
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.935
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.725
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.706
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.806
XM_002890997.1 Arabidopsis lyrata fgenesh2_kg.1__3472__AT1G33470.1 N 0.726
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.790