Glyma13g01740.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma13g01740.1 T52818_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma13g01740.1 RRM 18 85

Links

Other RRM family RBPs
Other Glycine max RBPs

100 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.971
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.971
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.956
MDP0000134468 Malus x domestica MDP0000134468 I 0.926
29908.m006046 Ricinus communis 29908.m006046 I 0.926
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.913
PK15672.1 Cannabis sativa PK15672.1 I 0.913
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.912
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.899
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.899
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.897
MDP0000233609 Malus x domestica MDP0000233609 I 0.882
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.870
ppa018926m Prunus persica ppa018926m I 0.870
ppa019392m Prunus persica ppa019392m I 0.870
mgf017214m Mimulus guttatus mgf017214m I 0.868
PK21213.1 Cannabis sativa PK21213.1 I 0.853
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.853
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.853
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.841
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.838
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.826
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.826
ppa009964m Prunus persica ppa009964m I 0.824
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.824
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.824
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.824
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.824
MDP0000138486 Malus x domestica MDP0000138486 I 0.824
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.812
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.809
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.809
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.794
MDP0000744398 Malus x domestica MDP0000744398 I 0.794
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.794
MDP0000548950 Malus x domestica MDP0000548950 I 0.794
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.794
MDP0000488395 Malus x domestica MDP0000488395 I 0.794
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.794
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.779
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.779
30076.m004440 Ricinus communis 30076.m004440 I 0.779
PK14266.1 Cannabis sativa PK14266.1 I 0.779
CU179634_3 Medicago truncatula CU179634_3 I 0.779
ppa009716m Prunus persica ppa009716m I 0.779
ppa016222m Prunus persica ppa016222m I 0.779
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.779
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.768
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.765
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.765
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.765
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.754
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.754
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.754
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.754
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.750
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.750
MDP0000284454 Malus x domestica MDP0000284454 I 0.750
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.750
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.750
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.739
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.739
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.739
MDP0000857317 Malus x domestica MDP0000857317 I 0.739
MDP0000118777 Malus x domestica MDP0000118777 I 0.739
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.735
MDP0000184420 Malus x domestica MDP0000184420 I 0.735
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.735
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.725
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.721
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.721
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.721
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.721
SB03G041530 Sorghum bicolor Sb03g041530 I 0.721
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.721
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.721
mgf016660m Mimulus guttatus mgf016660m I 0.721
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.721
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.721
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.721
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.721
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.721
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.721
ppa018603m Prunus persica ppa018603m I 0.710
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.710
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.710
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.706
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.706
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.706
30170.m013735 Ricinus communis 30170.m013735 I 0.706
SB03G046430 Sorghum bicolor Sb03g046430 N 0.706
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.706
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.706
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.706
SB04G030020 Sorghum bicolor Sb04g030020 I 0.706
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.706
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.706
MDP0000271231 Malus x domestica MDP0000271231 N 0.706
29923.m000811 Ricinus communis 29923.m000811 I 0.706
MDP0000181802 Malus x domestica MDP0000181802 N 0.706