CBF67577 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBF67577 T59695_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.936
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.807
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.807
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.807
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBF67577 RRM 11 80
CBF67577 RRM 102 171

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

207 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.731
AAA49742 Xenopus laevis AAA49742 I 0.731
AAA49948 Xenopus laevis AAA49948 I 1.000
AAA49949 Xenopus laevis AAA49949 I 0.724
AAA49950 Xenopus laevis AAA49950 I 0.714
AAB59951 Xenopus laevis AAB59951 I 0.943
AAH43750 Xenopus laevis AAH43750 I 0.943
AAH45260 Xenopus laevis AAH45260 I 0.745
AAH46692 Xenopus laevis AAH46692 I 1.000
AAH72090 Xenopus laevis AAH72090 I 0.738
AAI06633 Xenopus laevis AAI06633 I 0.943
AAI69881 Xenopus laevis AAI69881 I 0.714
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.936
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.745
CBF67555 Xenopus laevis CBF67555 I 0.731
CBF67578 Xenopus laevis CBF67578 I 0.714
CBF67672 Xenopus laevis CBF67672 I 0.738
CBU92428 Xenopus laevis CBU92428 I 0.731
CBU92450 Xenopus laevis CBU92450 I 1.000
CBU92451 Xenopus laevis CBU92451 I 0.714
CBU92546 Xenopus laevis CBU92546 I 0.738
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.717
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.710
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.901
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.717
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.759
ENSBTAG00000011195 Bos taurus ENSBTAG00000011195 I 0.734
ENSBTAG00000020849 Bos taurus ENSBTAG00000020849 I 0.762
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.701
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.701
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.700
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.715
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.707
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.717
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.703
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.710
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.714
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.702
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.731
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.722
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.736
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.726
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.729
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.736
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.739
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.700
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.701
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.708
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.701
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.703
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.729
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.710
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.745
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.936
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.724
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.703
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.745
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.726
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.724
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.745
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.710
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.738
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.745
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.745
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.710
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.731
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.745
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.752
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.717
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.929
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.921
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.733
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.745
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.715
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.731
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.726
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.714
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.704
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.709
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.708
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.717
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.738
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.745
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.717
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.731
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.738
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.717
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.731
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.738
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.745
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.731
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.738
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.714
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.738
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.717
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.936
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.717
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.745
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.710
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.717
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.717
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.745
ENSSSCG00000012503 Sus scrofa ENSSSCG00000012503 I 0.793
ENSSSCG00000013557 Sus scrofa ENSSSCG00000013557 I 0.755
ENSSSCG00000013561 Sus scrofa ENSSSCG00000013561 I 0.755
ENSSSCG00000013607 Sus scrofa ENSSSCG00000013607 I 0.836
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.921
ENSSSCG00000016710 Sus scrofa ENSSSCG00000016710 I 0.792
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.936
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.900
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.745
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.703
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.717
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.745
Gm8991 Mus musculus ENSMUSG00000059179 I 0.717
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.752
HNRNPA1 Homo sapiens ENSG00000135486 D 0.745
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.745
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.745
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.745
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.745
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.738
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.936
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.936
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.929
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.936
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.936
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.929
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.936
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.936
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.936
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.929
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.943
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.936
HNRNPA2B1 Tupaia belangeri ENSTBEG00000003219 I 0.766
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.929
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.936
HNRNPA2B1 Vicugna pacos ENSVPAG00000010417 I 0.843
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.936
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.936
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.943
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.936
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.936
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.936
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.936
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.936
HNRNPA2B1 Ochotona princeps ENSOPRG00000011698 I 0.729
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.738
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.726
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.726
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.738
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.731
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.726
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.726
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.726
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.726
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.738
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.719
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.726
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.726
HNRNPA3 Homo sapiens ENSG00000170144 I 0.726
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.724
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.701
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.726
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.726
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.710
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.726
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.738
LOC100054206 Equus caballus ENSECAG00000006699 I 0.722
LOC100066794 Equus caballus ENSECAG00000023237 I 0.724
LOC100068539 Equus caballus ENSECAG00000000782 I 0.936
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.726
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.745
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.738
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.936
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.731
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.717
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.726
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.731
LOC516616 Bos taurus ENSBTAG00000002284 I 0.836
LOC538435 Bos taurus ENSBTAG00000038680 I 0.720
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.745
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.745
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.724
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.745
LOC781499 Bos taurus ENSBTAG00000021580 I 0.726
LOC785445 Bos taurus ENSBTAG00000025621 I 0.717
P17130 Xenopus laevis P17130 I 0.731
P51968 Xenopus laevis P51968 I 0.724
P51989 Xenopus laevis P51989 I 1.000
P51990 Xenopus laevis P51990 I 0.943
P51992 Xenopus laevis P51992 I 0.714
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.724
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.943
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.745
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.745
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.724
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.745
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.745
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.745
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.936
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.726
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.745
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.725
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.731
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.724
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.703