fgenesh1_pg.C_scaffold_2000543 (Melampsora laricis populina)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 fgenesh1_pg.C_scaffold_2000543 T61215_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
eIF-2alpha
M231_0.6 		Drosophila melanogaster WGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00273 		0.776
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_2000543 S1 9 83

Links

Other S1 family RBPs
Other Melampsora laricis populina RBPs

266 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
114622 Helobdella robusta 114622 I 0.800
12209_YJR007W Saccharomyces mikatae 12209_YJR007W I 0.842
12331_YJR007W Saccharomyces paradoxus 12331_YJR007W I 0.842
13294_YJR007W Saccharomyces bayanus 13294_YJR007W I 0.842
29607.m000238 Ricinus communis 29607.m000238 I 0.763
69770 Aureococcus anophagefferens 69770 I 0.813
72304 Aureococcus anophagefferens 72304 I 0.813
A7TIH9_VANPO Vanderwaltozyma polyspora A7TIH9_VANPO I 0.855
AAEL013675 Aedes aegypti AAEL013675 I 0.737
AAH46576 Xenopus laevis AAH46576 I 0.800
AB05699.1 Alternaria brassicicola AB05699.1 I 0.855
ACLA_041660 Aspergillus clavatus CADACLAG00004024 I 0.855
AFLA_020350 Aspergillus flavus CADAFLAG00003920 I 0.855
AFUA_3G13480 Aspergillus fumigatus CADAFUAG00005171 I 0.833
AGAP011190 Anopheles gambiae AGAP011190 I 0.763
AGR320W Ashbya gossypii AGR320W I 0.842
AMAG_01618 Allomyces macrogynus AMAG_01618 I 0.840
AMAG_04113 Allomyces macrogynus AMAG_04113 I 0.840
amel4_ncbi_hmm23817 Apis mellifera amel4_ncbi_hmm23817 I 0.776
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.800
AMSG_04936 Thecamonas trahens AMSG_04936 I 0.800
ANIA_03156 Aspergillus nidulans CADANIAG00009914 I 0.855
AO090012000783 Aspergillus oryzae CADAORAG00006316 N 0.789
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.893
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.763
ATEG_04051 Aspergillus terreus CADATEAG00009463 I 0.855
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.763
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.763
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.882
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.882
BGIBMGA004302 Bombyx mori BGIBMGA004302 I 0.776
BGIOSIBCE010732 Oryza indica BGIOSIBCE010732 I 0.747
BGIOSIBCE026135 Oryza indica BGIOSIBCE026135 I 0.707
Bm1_04900 Brugia malayi Bm1_04900 I 0.787
BRADI1G16700 Brachypodium distachyon BRADI1G16700 I 0.747
BRADI1G65210 Brachypodium distachyon BRADI1G65210 N 0.733
CAGL0B03795g Candida glabrata CAGL0B03795g I 0.829
CAOG_02542 Capsaspora owczarzaki CAOG_02542 I 0.740
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.773
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.776
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.776
CBG22041 Caenorhabditis briggsae CBG22041 I 0.733
CBN03344 Caenorhabditis brenneri CBN03344 I 0.733
CBN09310 Caenorhabditis brenneri CBN09310 I 0.733
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.895
Cd36_06510 Candida dubliniensis Cd36_06510 I 0.829
cgd7_5270 Cryptosporidium parvum cgd7_5270 I 0.733
CHGG_04762 Chaetomium globosum CHGG_04762 I 0.895
Chro.70587 Cryptosporidium hominis Chro.70587 I 0.733
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.868
CLUG_04130 Candida lusitaniae CLUG_04130 I 0.842
CMU_019420 Cryptosporidium muris CMU_019420 N 0.720
CPAG_01889 Candida parapsilosis CPAG_01889 I 0.842
CPIJ011194 Culex quinquefasciatus CPIJ011194 I 0.763
CpipJ_CPIJ011194 Culex pipiens CpipJ_CPIJ011194 I 0.763
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.868
CRE03750 Caenorhabditis remanei CRE03750 I 0.733
CTRG_04191 Candida tropicalis CTRG_04191 I 0.842
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.763
DEHA0F26235g Debaryomyces hansenii DEHA0F26235g I 0.842
DGIL_AUG5s12507g4t1 Acyrtosiphon pisum DGIL_AUG5s12507g4t1 I 0.776
EAT79164.1 Phaeosphaeria nodorum EAT79164.1 I 0.855
EDP42051.1 Malassezia globosa EDP42051.1 I 0.855
EFA85538.1 Polysphondylium pallidum EFA85538.1 I 0.763
eIF-2alpha Drosophila melanogaster FBgn0261609 D 0.776
EIF2 Arabidopsis thaliana AT5G05470-TAIR-G I 0.747
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.800
eif2s1 Xenopus tropicalis ENSXETG00000011221 I 0.707
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.800
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.800
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.800
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.800
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.800
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.800
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.800
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.800
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.800
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.800
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.800
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.800
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.800
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.800
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.800
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.800
EIF2S1 Tarsius syrichta ENSTSYG00000014171 I 0.763
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.813
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.800
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.800
EIF2S1 Pteropus vampyrus ENSPVAG00000003040 I 0.773
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.800
EIF2S1 Homo sapiens ENSG00000134001 I 0.800
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.800
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.800
eif2s1 Danio rerio ENSDARG00000052178 I 0.800
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.800
eIF2s1 Dictyostelium discoideum DDB_G0271862 I 0.750
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.800
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.800
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.800
eif2s1l Danio rerio ENSDARG00000005827 I 0.800
ENSCHOG00000003744 Choloepus hoffmanni ENSCHOG00000003744 I 0.773
ENSCHOG00000004230 Choloepus hoffmanni ENSCHOG00000004230 I 0.773
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.787
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.800
estExt_fgenesh1_kg.C_10157 Myceliophthora thermophila estExt_fgenesh1_kg.C_10157 I 0.895
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.973
estExt_fgenesh1_kg.C_70012 Micromonas pusilla estExt_fgenesh1_kg.C_70012 I 0.787
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.882
estExt_fgenesh1_pg.C_210136 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210136 I 0.855
estExt_fgenesh1_pg.C_210283 Phytophthora capsici estExt_fgenesh1_pg.C_210283 I 0.760
estExt_fgenesh1_pg.C_Chr_02.00010078 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_02.00010078 I 0.773
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.800
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.882
estExt_fgenesh2_kg.C_20112 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_20112 I 0.803
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.908
estExt_fgenesh2_kg.C_40048 Neurospora tetrasperma estExt_fgenesh2_kg.C_40048 I 0.895
estExt_fgenesh2_pg.C_150109 Monosiga brevicollis estExt_fgenesh2_pg.C_150109 I 0.813
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.908
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.800
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.800
estExt_fgenesh2_pm.C_sca_10068 Lottia gigantea estExt_fgenesh2_pm.C_sca_10068 I 0.787
estExt_fgenesh3_kg.C_30291 Neurospora discreta estExt_fgenesh3_kg.C_30291 I 0.895
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.789
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.921
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.776
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.882
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.882
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.776
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.882
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.895
estExt_Genewise1.C_51162 Mucor circinelloides estExt_Genewise1.C_51162 I 0.813
estExt_Genewise1Plus.C_10999 Thielavia terrestris estExt_Genewise1Plus.C_10999 I 0.895
estExt_Genewise1Plus.C_230113 Phycomyces blakesleeanus estExt_Genewise1Plus.C_230113 I 0.800
estExt_Genewise1Plus.C_2350006 Capitella teleta estExt_Genewise1Plus.C_2350006 I 0.787
estExt_Genewise1Plus.C_80350 Agaricus bisporus estExt_Genewise1Plus.C_80350 I 0.882
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.882
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.816
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.776
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.816
e_gw1.18.114.1 Tremella mesenterica e_gw1.18.114.1 I 0.882
e_gw1.2.367.1 Ostreococcus RCC809 e_gw1.2.367.1 I 0.707
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.895
e_gw1.7.228.1 Trichoplax adhaerens e_gw1.7.228.1 I 0.787
e_gwEuk.2.353.1 Ostreococcus lucimarinus e_gwEuk.2.353.1 I 0.773
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.895
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.789
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.921
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.776
fgenesh1_pm.00077_#_3 Aspergillus carbonarius fgenesh1_pm.00077_#_3 I 0.855
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.868
fgenesh1_pm.C_scaffold_69000005 Phytophthora ramorum fgenesh1_pm.C_scaffold_69000005 I 0.840
fgeneshHS_pg.scaffold_37000098 Naegleria gruberi fgeneshHS_pg.scaffold_37000098 N 0.750
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 Emiliania huxleyi fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 I 0.813
FGSG_06220 Fusarium graminearum FGSG_06220 I 0.868
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.882
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.882
GA22144-RA Drosophila pseudoobscura FBgn0082124 I 0.776
GD15749 Drosophila simulans FBgn0187410 I 0.776
GE15968 Drosophila yakuba FBgn0233524 I 0.776
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.921
GF19374 Drosophila ananassae FBgn0096384 I 0.776
GG19321 Drosophila erecta FBgn0111525 I 0.776
GI21763 Drosophila mojavensis FBgn0144493 I 0.776
GID1.0050760 Dictyostelium purpureum GID1.0050760 I 0.763
GJ19141 Drosophila virilis FBgn0206286 I 0.776
GK25248 Drosophila willistoni FBgn0227207 I 0.776
GL20268 Drosophila persimilis FBgn0157863 I 0.776
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.895
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.763
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.763
GM13399 Drosophila sechellia FBgn0168330 I 0.776
GRMZM2G058138 Zea mays GRMZM2G058138 I 0.747
GRMZM2G083262 Zea mays GRMZM2G083262 I 0.747
GSTUMT00002346001 Tuber melanosporum GSTUMT00002346001 I 0.868
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.763
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.893
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.800
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.800
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.800
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.787
ISCW017360 Ixodes scapularis ISCW017360 I 0.816
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.853
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.868
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.868
LELG_00811 Lodderomyces elongisporus LELG_00811 I 0.842
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.763
LOAG_09556 Loa loa LOAG_09556 I 0.787
LOC100052709 Equus caballus ENSECAG00000018424 I 0.800
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.800
LOC_Os03g18510 Oryza sativa LOC_Os03g18510 I 0.747
LOC_Os07g49220 Oryza sativa LOC_Os07g49220 I 0.707
MCYG_00123 Microsporum canis MCYG_00123 I 0.893
MDP0000155133 Malus x domestica MDP0000155133 I 0.760
MDP0000663428 Malus x domestica MDP0000663428 I 0.763
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.763
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.763
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.763
mgf006782m Mimulus guttatus mgf006782m I 0.750
MGG_13200 Magnaporthe oryzae MGG_13200 I 0.882
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.893
Minc01303 Meloidogyne incognita Minc01303 I 0.747
nasonia_NCBI_hmm338664 Nasonia vitripennis nasonia_NCBI_hmm338664 I 0.776
NCLIV_056550 Neospora caninum NCLIV_056550 I 0.707
NCU08277 Neurospora crassa NCU08277 I 0.895
NFIA_063860 Neosartorya fischeri CADNFIAG00005762 I 0.855
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.789
Pa_6_5980 Podospora anserina Pa_6_5980 I 0.895
PBANKA_021210 Plasmodium berghei PBANKA_021210 N 0.707
PCHAS_021050 Plasmodium chabaudi PCHAS_021050 N 0.707
PF07_0117 Plasmodium falciparum PF07_0117 N 0.707
PGTG_13830 Puccinia graminis PGTG_13830 N 0.853
PGUG_00485 Candida guilliermondii PGUG_00485 I 0.816
PHATRDRAFT_34538 Phaeodactylum tricornutum Phatr34538 I 0.789
PHUM551010 Pediculus humanus PHUM551010 I 0.776
PITG_07885 Phytophthora infestans PITG_07885 I 0.840
PK10564.1 Cannabis sativa PK10564.1 I 0.763
PKH_021240 Plasmodium knowlesi PKH_021240 N 0.707
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.868
ppa008120m Prunus persica ppa008120m I 0.763
PPA05168 Pristionchus pacificus PPA05168 I 0.733
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.882
PTRG_05239 Pyrenophora tritici repentis PTRG_05239 I 0.855
PTSG_05806 Salpingoeca rosetta PTSG_05806 I 0.733
PVX_081705 Plasmodium vivax PVX_081705 N 0.707
PY00093 Plasmodium yoelii PY00093 N 0.707
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.800
RO3G_12494 Rhizopus oryzae RO3G_12494 I 0.813
RO3G_13185 Rhizopus oryzae RO3G_13185 I 0.813
SAKL0G14058g Lachancea kluyveri SAKL0G14058g I 0.855
SB01G038230 Sorghum bicolor Sb01g038230 I 0.747
Scas_Contig479.2 Saccharomyces castellii Scas_Contig479.2 I 0.853
Scas_Contig617.9 Saccharomyces castellii Scas_Contig617.9 I 0.853
SJAG_03629 Schizosaccharomyces japonicus SJAG_03629 I 0.880
Skud_Contig1955.10 Saccharomyces kudriavzevii Skud_Contig1955.10 I 0.829
SNOG_13280 Stagonospora nodorum SNOG_13280 I 0.855
SOCG_01617 Schizosaccharomyces octosporus SOCG_01617 I 0.880
SPOG_03916 Schizosaccharomyces cryophilus SPOG_03916 I 0.880
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.880
SS1G_13048 Sclerotinia sclerotiorum SS1G_13048 I 0.848
SUI2 Candida albicans orf19.6213 I 0.829
SUI2 Saccharomyces cerevisiae YJR007W I 0.842
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.893
TERG_00559 Trichophyton rubrum TERG_00559 I 0.893
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.893
TGGT1_089620 Toxoplasma gondii TGGT1_089620 I 0.707
TGME49_113230 Toxoplasma gondii TGME49_113230 I 0.707
TGVEG_097260 Toxoplasma gondii TGVEG_097260 I 0.707
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.789
tif211 Schizosaccharomyces pombe SPAC3G9.09c I 0.880
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.893
UM01463 Ustilago maydis UM01463 I 0.855
UREG_00217 Uncinocarpus reesii UREG_00217 I 0.882
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.895
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.895
WUBG_12485 Wuchereria bancrofti WUBG_12485 I 0.787
XM_002873169.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000426 N 0.733
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.763
XP_001176254.1 Strongylocentrotus purpuratus XP_001176254.1 I 0.760
XP_001176396.1 Strongylocentrotus purpuratus XP_001176396.1 I 0.760
XP_002156465.1 Hydra magnipapillata XP_002156465.1 I 0.840
XP_002492289.1 Pichia pastoris XP_002492289.1 I 0.855
XP_779939.1 Strongylocentrotus purpuratus XP_779939.1 I 0.760
XP_801812.1 Strongylocentrotus purpuratus XP_801812.1 I 0.760
Y37E3.10 Caenorhabditis elegans Y37E3.10 I 0.733
YALI0B01034g Yarrowia lipolytica YALI0B01034g I 0.829
ZYRO0G12056g Zygosaccharomyces rouxii ZYRO0G12056g I 0.855