CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh1_pg.C_scaffold_2000543
(
Melampsora laricis populina
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
fgenesh1_pg.C_scaffold_2000543
T61215_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
eIF-2alpha
M231_0.6
Drosophila melanogaster
WGCAUG
RNAcompete
Ray et al.(2013)
RNCMPT00273
0.776
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.C_scaffold_2000543
S1
9
83
PEPDELVMVQVKQIQDMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGRNEVVVVMRVDKEKGYIDLSKR
Links
Other
S1
family RBPs
Other
Melampsora laricis populina
RBPs
266 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R018576
Ailuropoda melanoleuca
Ame_R018576
N
0.000
ENSACAG00000017034
Anolis carolinensis
ENSACAG00000017034
N
0.000
ENSBTAG00000020419
Bos taurus
ENSBTAG00000020419
N
0.000
ENSCJAG00000020956
Callithrix jacchus
ENSCJAG00000020956
N
0.000
ENSCPOG00000004227
Cavia porcellus
ENSCPOG00000004227
N
0.000
ENSEEUG00000002115
Erinaceus europaeus
ENSEEUG00000002115
N
0.000
ENSETEG00000005141
Echinops telfairi
ENSETEG00000005141
N
0.000
ENSGGOG00000011962
Gorilla gorilla
ENSGGOG00000011962
N
0.000
ENSLAFG00000009326
Loxodonta africana
ENSLAFG00000009326
N
0.000
ENSLAFG00000018654
Loxodonta africana
ENSLAFG00000018654
N
0.000
ENSMGAG00000014689
Meleagris gallopavo
ENSMGAG00000014689
N
0.000
ENSMICG00000003211
Microcebus murinus
ENSMICG00000003211
N
0.000
ENSMLUG00000009780
Myotis lucifugus
ENSMLUG00000009780
N
0.000
ENSOANG00000002571
Ornithorhynchus anatinus
ENSOANG00000002571
N
0.000
ENSOCUG00000004295
Oryctolagus cuniculus
ENSOCUG00000004295
N
0.000
ENSPPYG00000020150
Pongo pygmaeus
ENSPPYG00000020150
N
0.000
ENSPVAG00000010216
Pteropus vampyrus
ENSPVAG00000010216
N
0.000
ENSTBEG00000008533
Tupaia belangeri
ENSTBEG00000008533
N
0.000
ENSTSYG00000005278
Tarsius syrichta
ENSTSYG00000005278
N
0.000
ENSVPAG00000007641
Vicugna pacos
ENSVPAG00000007641
N
0.000
Q9W6Q9_FUGRU
Takifugu rubripes
ENSTRUG00000017089
N
0.000
XM_001380899.1
Monodelphis domestica
ENSMODG00000017202
N
0.000
XM_542254.2
Canis familiaris
ENSCAFG00000025134
N
0.000
XM_548872.2
Canis familiaris
ENSCAFG00000012201
N
0.000
Zrsr1
Mus musculus
ENSMUSG00000044068
N
0.000
Zrsr1
Rattus norvegicus
ENSRNOG00000009639
N
0.000
ZRSR1
Homo sapiens
ENSG00000212643
N
0.000
ZRSR1
Pan troglodytes
ENSPTRG00000017138
N
0.000
Zrsr1
Dipodomys ordii
ENSDORG00000001238
N
0.000
ZRSR2
Tetraodon nigroviridis
ENSTNIG00000009495
N
0.000
zrsr2
Danio rerio
ENSDARG00000058448
N
0.000
ZRSR2
Taeniopygia guttata
ENSTGUG00000007964
N
0.000
ZRSR2
Homo sapiens
ENSG00000169249
N
0.000
Zrsr2
Rattus norvegicus
ENSRNOG00000033176
N
0.000
ZRSR2
Gasterosteus aculeatus
ENSGACG00000015069
N
0.000
ZRSR2
Pan troglodytes
ENSPTRG00000021693
N
0.000
ZRSR2
Gallus gallus
ENSGALG00000016552
N
0.000
Zrsr2
Mus musculus
ENSMUSG00000031370
N
0.000
ZRSR2
Macaca mulatta
ENSMMUG00000014054
N
0.000