CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SJAG_03191
(
Schizosaccharomyces japonicus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
SJAG_03191
T01565_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SJAG_03191T0
CCCH ZF
54
77
HVPCKFFRQGACTAGNNCPFSHSL
SJAG_03191T0
CCCH ZF
80
104
ERSPCKYFLKGNCKFGSKCALSHSP
Links
Other
CCCH ZF
family RBPs
Other
Schizosaccharomyces japonicus
RBPs
40 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.000
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
0.000
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.000
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.000
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.000
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.000
MYEF2
Homo sapiens
ENSG00000104177
N
0.000
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.000
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.000
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.000
MYEF2
Ochotona princeps
ENSOPRG00000003919
N
0.000
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.000
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
0.000
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.000
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.000
MYEF2
Sorex araneus
ENSSARG00000003264
N
0.000
MYEF2
Spermophilus tridecemlineatus
ENSSTOG00000007740
N
0.000
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.000
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.000
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.000