gw1.151.82.1 (Selaginella moellendorfii)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 gw1.151.82.1 T05512_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.151.82.1 CCCH ZF 10 36
gw1.151.82.1 CCCH ZF 55 81
gw1.151.82.1 CCCH ZF 101 127
gw1.151.82.1 CCCH ZF 204 230
gw1.151.82.1 CCCH ZF 250 276

Links

Other CCCH ZF family RBPs
Other Selaginella moellendorfii RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.719
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.733
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.719
PK23881.1 Cannabis sativa PK23881.1 N 0.741
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.726
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.711
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.733
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.733
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.733
MDP0000207283 Malus x domestica MDP0000207283 N 0.704
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.711
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.711
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.733
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.726
mgf007299m Mimulus guttatus mgf007299m N 0.711
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.741
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.741
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.733
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.815
ppa005229m Prunus persica ppa005229m N 0.704
ppa005813m Prunus persica ppa005813m N 0.733
30128.m009030 Ricinus communis 30128.m009030 N 0.733
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.741
SB05G013190 Sorghum bicolor Sb05g013190 N 0.733
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.741
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.711
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.741
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.733