Sb03g043810 (Sorghum bicolor)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Sb03g043810 T04111_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb03g043810.1 CCCH ZF 70 96
Sb03g043810.1 CCCH ZF 116 141
Sb03g043810.1 CCCH ZF 161 187
Sb03g043810.1 CCCH ZF 313 339
Sb03g043810.1 CCCH ZF 359 385
Sb03g043810.2 CCCH ZF 10 35
Sb03g043810.2 CCCH ZF 55 81
Sb03g043810.2 CCCH ZF 207 233
Sb03g043810.2 CCCH ZF 253 279

Links

Other CCCH ZF family RBPs
Other Sorghum bicolor RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G107491 Zea mays GRMZM2G107491 N 1.000
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.993
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.963
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.925
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.888
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.866
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.858
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.858
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.851
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.836
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.836
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.836
PK23881.1 Cannabis sativa PK23881.1 N 0.836
ppa005813m Prunus persica ppa005813m N 0.836
30128.m009030 Ricinus communis 30128.m009030 N 0.836
SB05G013190 Sorghum bicolor Sb05g013190 N 0.828
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.828
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.828
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.828
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.828
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.821
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.806
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.806
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.800
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.800
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.791
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.791
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.784
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.776
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.776
GSVIVG00019119001 Vitis vinifera GSVIVG00019119001 N 0.776
mgf007299m Mimulus guttatus mgf007299m N 0.770
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.741
MDP0000178517 Malus x domestica MDP0000178517 N 0.739
BGIOSIBCE034418 Oryza indica BGIOSIBCE034418 N 0.738
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.731