BRADI2G58770 (Brachypodium distachyon)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 BRADI2G58770 T01995_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G58770.1 CCCH ZF 81 107
BRADI2G58770.1 CCCH ZF 127 152
BRADI2G58770.1 CCCH ZF 173 198
BRADI2G58770.1 CCCH ZF 334 360
BRADI2G58770.1 CCCH ZF 380 406

Links

Other CCCH ZF family RBPs
Other Brachypodium distachyon RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.925
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.925
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.919
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.918
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.858
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.843
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.828
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.828
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.821
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.821
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.821
PK23881.1 Cannabis sativa PK23881.1 N 0.821
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.821
ppa005813m Prunus persica ppa005813m N 0.821
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.821
30128.m009030 Ricinus communis 30128.m009030 N 0.821
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.821
SB05G013190 Sorghum bicolor Sb05g013190 N 0.813
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.813
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.806
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.806
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.806
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.799
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.799
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.799
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.791
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.791
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.784
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.776
mgf007299m Mimulus guttatus mgf007299m N 0.776
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.761
MDP0000178517 Malus x domestica MDP0000178517 N 0.731
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.719
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.709