CSDA (Procavia capensis)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSPCAG00000001397 T16969_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.930
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.930
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.861
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.861
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.861
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.861
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000001286 CSD 86 155

Links

Other CSD family RBPs
Other Procavia capensis RBPs

181 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.764
AAEL001375 Aedes aegypti AAEL001375 I 0.722
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.736
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.000
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.000
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.000
AGAP006108 Anopheles gambiae AGAP006108 I 0.722
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.778
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.778
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.750
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.901
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.901
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.930
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.930
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.859
Bm1_57515 Brugia malayi Bm1_57515 I 0.708
CBN16711 Caenorhabditis brenneri CBN16711 I 0.000
CBG02981 Caenorhabditis briggsae CBG02981 I 0.000
cey-1 Caenorhabditis elegans F33A8.3 I 0.000
CJA05984 Caenorhabditis japonica CJA05984 I 0.000
CRE01789 Caenorhabditis remanei CRE01789 I 0.000
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.792
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.845
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.930
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.792
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.775
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.887
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.819
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.859
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.708
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.901
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.901
ENSCJAG00000009207 Callithrix jacchus ENSCJAG00000009207 I 0.000
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.792
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.930
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.736
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.784
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.778
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.930
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.930
YBX2 Canis familiaris ENSCAFG00000016128 I 0.901
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.736
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.736
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.873
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.915
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.722
gw1.598.14.1 Capitella teleta gw1.598.14.1 I 0.000
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.000
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.750
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.000
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.806
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.722
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.000
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.722
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.722
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.722
gw1.342.14.1 Capitella teleta gw1.342.14.1 I 0.000
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.901
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.930
CSDA Cavia porcellus ENSCPOG00000011329 I 0.930
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.930
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.726
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.740
ybx1 Danio rerio ENSDARG00000004757 I 0.930
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.750
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.000
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.000
Csda Dipodomys ordii ENSDORG00000009103 I 0.930
GF10852 Drosophila ananassae FBgn0087892 I 0.764
GH16919 Drosophila grimshawi FBgn0124390 I 0.764
yps Drosophila melanogaster FBgn0022959 I 0.750
GI13673 Drosophila mojavensis FBgn0136428 I 0.764
GL15684 Drosophila persimilis FBgn0153288 I 0.764
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.764
GM24682 Drosophila sechellia FBgn0179545 I 0.750
GD12750 Drosophila simulans FBgn0184477 I 0.750
GJ14010 Drosophila virilis FBgn0201228 I 0.764
GK16710 Drosophila willistoni FBgn0218712 I 0.764
GE20150 Drosophila yakuba FBgn0237472 I 0.750
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.000
YBX1 Echinops telfairi ENSETEG00000014789 I 0.000
YBX2 Echinops telfairi ENSETEG00000014271 I 0.000
CSDA Echinops telfairi ENSETEG00000002557 I 0.930
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.930
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.915
LOC100072964 Equus caballus ENSECAG00000009996 I 0.901
LOC100065107 Equus caballus ENSECAG00000013777 I 0.930
LOC100067336 Equus caballus ENSECAG00000023592 I 0.930
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.930
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.873
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.930
CSDA Felis catus ENSFCAG00000018959 I 0.000
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.930
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.930
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.930
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.781
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.930
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.929
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.887
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.708
146547 Helobdella robusta 146547 I 0.000
133388 Helobdella robusta 133388 I 0.000
YB-1 Homo sapiens ENSG00000065978 D 0.930
YBX2 Homo sapiens ENSG00000006047 D 0.887
CSDA Homo sapiens ENSG00000060138 I 0.930
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.792
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.792
ISCW005281 Ixodes scapularis ISCW005281 I 0.750
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.806
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.901
CSDA Loxodonta africana ENSLAFG00000017247 I 0.930
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.930
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.930
CSDA Macaca mulatta ENSMMUG00000022469 I 0.930
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.901
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.915
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.722
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.930
Minc12652 Meloidogyne incognita Minc12652 I 0.000
CSDA Microcebus murinus ENSMICG00000004602 I 0.789
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.887
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.873
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.930
CSDA Monodelphis domestica ENSMODG00000018248 I 0.915
Csda Mus musculus ENSMUSG00000030189 I 0.930
Ybx1 Mus musculus ENSMUSG00000028639 I 0.930
Ybx2 Mus musculus ENSMUSG00000018554 I 0.901
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.833
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.803
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.930
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.901
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.722
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.901
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.764
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.736
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.930
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.930
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.000
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.000
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.000
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.930
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.781
YBX2 Oryzias latipes ENSORLG00000018683 I 0.000
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.764
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.930
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.887
CSDA Pan troglodytes ENSPTRG00000004681 I 0.930
PHUM156710 Pediculus humanus PHUM156710 I 0.750
PHUM156720 Pediculus humanus PHUM156720 I 0.750
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.930
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.775
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.722
YBX1 Procavia capensis ENSPCAG00000008397 I 0.000
YBX2 Procavia capensis ENSPCAG00000008019 I 0.901
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.930
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.930
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.708
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.873
Csda Rattus norvegicus ENSRNOG00000005480 I 0.930
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.930
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.915
ENSRNOG00000023294 Rattus norvegicus ENSRNOG00000023294 N 0.000
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.901
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.901
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.736
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.792
YBX1 Sorex araneus ENSSARG00000012628 I 0.736
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.000
YBX2 Sorex araneus ENSSARG00000000488 I 0.901
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.930
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.778
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.778
CSDA Sus scrofa ENSSSCG00000000633 I 0.930
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.873
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.736
YBX2 Sus scrofa ENSSSCG00000017938 I 0.901
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.806
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.930
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.930
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.930
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.781
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.750
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.930
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.781
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.778
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.708
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.930
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.901
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.000
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.803
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.000
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.930
CSDA Vicugna pacos ENSVPAG00000000876 I 0.789
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.708
AAI55915 Xenopus laevis AAI55915 I 0.887
AAI69704 Xenopus laevis AAI69704 I 0.887
ybx2-a Xenopus laevis AAI69706 D 0.887
CAA42778 Xenopus laevis CAA42778 I 0.930
P21573 Xenopus laevis P21573 I 0.930
P21574 Xenopus laevis P21574 I 0.887
P45441 Xenopus laevis P45441 I 0.873
AAI55914 Xenopus laevis AAI55914 I 0.873
AAI30161 Xenopus laevis AAI30161 I 0.930
AAI06324 Xenopus laevis AAI06324 I 0.930
AAH42217 Xenopus laevis AAH42217 I 0.930
AAH41191 Xenopus laevis AAH41191 I 0.930
AAA49924 Xenopus laevis AAA49924 I 0.873
AAA49716 Xenopus laevis AAA49716 I 0.887
AAA49715 Xenopus laevis AAA49715 I 0.930
Q00436 Xenopus laevis Q00436 I 0.930
csda Xenopus tropicalis ENSXETG00000016239 I 0.887
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.930