CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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KHSRP
(
Loxodonta africana
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSLAFG00000002426
T18918_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.996
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.996
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.996
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.996
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000002029
KH
63
125
TEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMML
ENSLAFP00000002029
KH
152
216
VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGAQNTNVDKPLRIIGDPYKVQQACEMV
ENSLAFP00000002029
KH
241
303
GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARII
ENSLAFP00000002029
KH
343
408
EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLI
ENSLAFP00000026615
KH
66
128
TEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMML
ENSLAFP00000026615
KH
155
219
VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGAQNTNVDKPLRIIGDPYKVQQACEMV
ENSLAFP00000026615
KH
244
306
GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARII
ENSLAFP00000026615
KH
346
411
EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLI
ENSLAFP00000027833
KH
63
125
TEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMML
ENSLAFP00000027833
KH
152
216
VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGAQNTNVDKPLRIIGDPYKVQQACEMV
ENSLAFP00000027833
KH
241
303
GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARII
ENSLAFP00000027833
KH
343
408
EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLI
Links
Other
KH
family RBPs
Other
Loxodonta africana
RBPs
80 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R001963
Ailuropoda melanoleuca
Ame_R001963
N
0.000
MKRN1
Anolis carolinensis
ENSACAG00000010934
N
0.000
A2VDX6_BOVIN
Bos taurus
ENSBTAG00000008306
N
0.000
MKRN1
Callithrix jacchus
ENSCJAG00000004068
N
0.000
ENSCAFG00000003953
Canis familiaris
ENSCAFG00000003953
N
0.000
ENSCPOG00000000948
Cavia porcellus
ENSCPOG00000000948
N
0.000
MKRN1
Choloepus hoffmanni
ENSCHOG00000011015
N
0.000
mkrn1
Danio rerio
ENSDARG00000041665
N
0.000
MKRN1
Dasypus novemcinctus
ENSDNOG00000019564
N
0.000
MKRN1
Echinops telfairi
ENSETEG00000007348
N
0.000
LOC100065893
Equus caballus
ENSECAG00000017929
N
0.000
MKRN1
Felis catus
ENSFCAG00000013043
N
0.000
Q9PTI4_CHICK
Gallus gallus
ENSGALG00000012852
N
0.000
MKRN1
Gasterosteus aculeatus
ENSGACG00000019227
N
0.000
ENSGGOG00000023977
Gorilla gorilla
ENSGGOG00000023977
N
0.000
ENSGGOG00000024940
Gorilla gorilla
ENSGGOG00000024940
N
0.000
MKRN1
Homo sapiens
ENSG00000133606
N
0.000
MKRN1
Loxodonta africana
ENSLAFG00000018408
N
0.000
MKRN1
Macaca mulatta
ENSMMUG00000010420
N
0.000
ENSMMUG00000001017
Macaca mulatta
ENSMMUG00000001017
N
0.000
MKRN1_MACEU
Macropus eugenii
ENSMEUG00000007399
N
0.000
MKRN1
Meleagris gallopavo
ENSMGAG00000013208
N
0.000
MKRN1
Microcebus murinus
ENSMICG00000002114
N
0.000
ENSMODG00000013686
Monodelphis domestica
ENSMODG00000013686
N
0.000
Mkrn1
Mus musculus
ENSMUSG00000029922
N
0.000
MKRN1
Myotis lucifugus
ENSMLUG00000006053
N
0.000
MKRN1
Ochotona princeps
ENSOPRG00000010353
N
0.000
ENSOCUG00000010180
Oryctolagus cuniculus
ENSOCUG00000010180
N
0.000
ENSOCUG00000021607
Oryctolagus cuniculus
ENSOCUG00000021607
N
0.000
ENSOCUG00000013132
Oryctolagus cuniculus
ENSOCUG00000013132
N
0.000
MKRN1
Oryzias latipes
ENSORLG00000012765
N
0.000
ENSOGAG00000009877
Otolemur garnettii
ENSOGAG00000009877
N
0.000
XR_024878.1
Pan troglodytes
ENSPTRG00000019766
N
0.000
ENSPPYG00000018057
Pongo pygmaeus
ENSPPYG00000018057
N
0.000
ENSPPYG00000020255
Pongo pygmaeus
ENSPPYG00000020255
N
0.000
MKRN1
Procavia capensis
ENSPCAG00000014683
N
0.000
MKRN1
Pteropus vampyrus
ENSPVAG00000011185
N
0.000
Q68FR1_RAT
Rattus norvegicus
ENSRNOG00000009280
N
0.000
MKRN1
Sorex araneus
ENSSARG00000013683
N
0.000
MKRN1
Sus scrofa
ENSSSCG00000016498
N
0.000
MKRN1
Taeniopygia guttata
ENSTGUG00000011669
N
0.000
NP_001072050.1
Takifugu rubripes
ENSTRUG00000012057
N
0.000
MKRN1
Tarsius syrichta
ENSTSYG00000009996
N
0.000
MKRN1
Tetraodon nigroviridis
ENSTNIG00000007231
N
0.000
MKRN1
Tupaia belangeri
ENSTBEG00000004564
N
0.000
MKRN1
Tursiops truncatus
ENSTTRG00000009528
N
0.000
AAH74368
Xenopus laevis
AAH74368
N
0.000
Q6GLT5
Xenopus laevis
Q6GLT5
N
0.000